Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt essD and ybcS overlap by 1 nucleotides ybcS and rzpD overlap by 4 nucleotides rzpD and rzoD overlap by 242 nucleotides rzoD and borD are separated by 90 nucleotides
b0554: essD - DLP12 prophage; predicted phage lysis protein (NCBI), at 576,621 to 576,836
essD
b0555: ybcS - DLP12 prophage; predicted lysozyme (NCBI), at 576,836 to 577,333
ybcS
b0556: rzpD - DLP12 prophage; predicted murein endopeptidase (NCBI), at 577,330 to 577,791
rzpD
b4510: rzoD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,550 to 577,732
rzoD
b0557: borD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,823 to 578,116
borD
Position (kb) 576
577 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 575.635 kb on - strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.685 kb on - strand at 575.688 kb on + strand at 575.690 kb on - strand at 575.697 kb on - strand at 575.697 kb on - strand at 575.698 kb on - strand at 575.714 kb on + strand at 575.722 kb on - strand at 575.773 kb on + strand at 575.774 kb on + strand at 575.827 kb on + strand at 575.830 kb on + strand at 575.872 kb on + strand at 575.878 kb on + strand at 575.882 kb on + strand at 575.882 kb on + strand at 575.887 kb on + strand at 575.887 kb on + strand at 575.890 kb on - strand at 575.901 kb on + strand at 575.909 kb on + strand at 575.909 kb on - strand at 575.912 kb on + strand at 575.912 kb on + strand at 575.924 kb on + strand at 575.933 kb on + strand at 575.941 kb on - strand at 575.941 kb on - strand at 575.941 kb on - strand at 575.981 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 576.003 kb on + strand at 576.114 kb on - strand at 576.114 kb on - strand at 576.180 kb on + strand at 576.207 kb on + strand at 576.209 kb on + strand at 576.443 kb on + strand at 576.446 kb on + strand at 576.464 kb on + strand at 576.464 kb on + strand at 576.470 kb on - strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.475 kb on - strand at 576.480 kb on - strand at 576.515 kb on + strand at 576.525 kb on - strand at 576.525 kb on - strand at 576.531 kb on - strand at 576.538 kb on - strand at 576.538 kb on - strand at 576.539 kb on - strand at 576.539 kb on - strand at 576.541 kb on + strand at 576.541 kb on + strand at 576.551 kb on - strand at 576.551 kb on - strand at 576.561 kb on + strand at 576.561 kb on - strand at 576.563 kb on - strand at 576.563 kb on - strand at 576.611 kb on + strand at 576.626 kb on - strand at 576.640 kb on - strand at 576.640 kb on - strand at 576.645 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.678 kb on + strand, within essD at 576.680 kb on - strand, within essD at 576.684 kb on - strand, within essD at 576.688 kb on + strand, within essD at 576.691 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.712 kb on - strand, within essD at 576.719 kb on + strand, within essD at 576.725 kb on - strand, within essD at 576.725 kb on - strand, within essD at 576.732 kb on + strand, within essD at 576.732 kb on + strand, within essD at 576.739 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.744 kb on - strand, within essD at 576.751 kb on + strand, within essD at 576.773 kb on - strand, within essD at 576.819 kb on + strand at 576.819 kb on + strand at 576.826 kb on - strand at 576.839 kb on + strand at 576.855 kb on + strand at 576.869 kb on + strand at 576.869 kb on + strand at 576.891 kb on + strand, within ybcS at 576.891 kb on + strand, within ybcS at 576.902 kb on + strand, within ybcS at 576.920 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.942 kb on + strand, within ybcS at 576.956 kb on + strand, within ybcS at 576.956 kb on - strand, within ybcS at 576.975 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.989 kb on - strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 577.024 kb on - strand, within ybcS at 577.057 kb on + strand, within ybcS at 577.072 kb on + strand, within ybcS at 577.077 kb on - strand, within ybcS at 577.117 kb on + strand, within ybcS at 577.145 kb on - strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.156 kb on - strand, within ybcS at 577.205 kb on + strand, within ybcS at 577.227 kb on + strand, within ybcS at 577.232 kb on + strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.285 kb on - strand at 577.337 kb on + strand at 577.337 kb on + strand at 577.384 kb on - strand, within rzpD at 577.384 kb on - strand, within rzpD at 577.386 kb on + strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.405 kb on - strand, within rzpD at 577.408 kb on - strand, within rzpD at 577.662 kb on + strand at 577.721 kb on + strand at 577.728 kb on + strand at 577.767 kb on + strand at 577.767 kb on + strand at 577.786 kb on + strand at 577.786 kb on + strand at 577.787 kb on + strand at 577.791 kb on + strand at 577.794 kb on - strand at 577.797 kb on + strand at 577.798 kb on + strand at 577.799 kb on - strand at 577.804 kb on - strand at 577.814 kb on + strand at 577.830 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 1.25 vol% remove 575,635 - -2.2 575,682 + -2.9 575,682 + +0.2 575,682 + -2.1 575,685 - +1.4 575,688 + +1.8 575,690 - -1.4 575,697 - -0.4 575,697 - +0.4 575,698 - +0.1 575,714 + +0.4 575,722 - -1.3 575,773 + +0.6 575,774 + +0.9 575,827 + +0.7 575,830 + -0.5 575,872 + +0.4 575,878 + +0.4 575,882 + +0.5 575,882 + +0.4 575,887 + -1.1 575,887 + +1.7 575,890 - +0.1 575,901 + -0.4 575,909 + -0.4 575,909 - +0.3 575,912 + +0.7 575,912 + -1.8 575,924 + +0.3 575,933 + +0.7 575,941 - -2.7 575,941 - +1.6 575,941 - +1.2 575,981 + +0.0 575,998 + -0.0 575,998 + +0.5 575,998 + -1.3 576,003 + +0.7 576,114 - -2.1 576,114 - -0.0 576,180 + -0.1 576,207 + -1.2 576,209 + +0.4 576,443 + -0.0 576,446 + -1.0 576,464 + +0.5 576,464 + -0.2 576,470 - -0.5 576,472 + -0.2 576,472 + -0.9 576,472 + -0.4 576,475 - -1.3 576,480 - +0.1 576,515 + +0.7 576,525 - +0.7 576,525 - +2.9 576,531 - +0.1 576,538 - -0.9 576,538 - -0.8 576,539 - +2.1 576,539 - -0.6 576,541 + -0.2 576,541 + -2.6 576,551 - -0.8 576,551 - -1.3 576,561 + -1.4 576,561 - -0.6 576,563 - +0.0 576,563 - -0.0 576,611 + -3.2 576,626 - +0.4 576,640 - +1.6 576,640 - -2.3 576,645 - essD b0554 0.11 +1.0 576,662 - essD b0554 0.19 +1.1 576,662 - essD b0554 0.19 -0.7 576,670 - essD b0554 0.23 -0.3 576,670 - essD b0554 0.23 -0.5 576,672 - essD b0554 0.24 -0.0 576,672 - essD b0554 0.24 +1.1 576,672 - essD b0554 0.24 -0.8 576,678 + essD b0554 0.26 -4.1 576,680 - essD b0554 0.27 -0.7 576,684 - essD b0554 0.29 +0.9 576,688 + essD b0554 0.31 +0.4 576,691 + essD b0554 0.32 -1.1 576,704 + essD b0554 0.38 -2.0 576,704 + essD b0554 0.38 -3.0 576,712 - essD b0554 0.42 -0.1 576,719 + essD b0554 0.45 -3.3 576,725 - essD b0554 0.48 -0.7 576,725 - essD b0554 0.48 -1.6 576,732 + essD b0554 0.51 -5.4 576,732 + essD b0554 0.51 -2.9 576,739 - essD b0554 0.55 +1.3 576,740 - essD b0554 0.55 -0.2 576,740 - essD b0554 0.55 +0.5 576,744 - essD b0554 0.57 -0.1 576,751 + essD b0554 0.60 -1.8 576,773 - essD b0554 0.70 +0.5 576,819 + +0.0 576,819 + +0.5 576,826 - +0.9 576,839 + -0.3 576,855 + +0.1 576,869 + +3.1 576,869 + +1.4 576,891 + ybcS b0555 0.11 -1.7 576,891 + ybcS b0555 0.11 +0.7 576,902 + ybcS b0555 0.13 +0.5 576,920 + ybcS b0555 0.17 -0.5 576,932 + ybcS b0555 0.19 -2.0 576,932 + ybcS b0555 0.19 -1.4 576,940 - ybcS b0555 0.21 +0.6 576,940 - ybcS b0555 0.21 -0.1 576,941 - ybcS b0555 0.21 -1.3 576,941 - ybcS b0555 0.21 +1.6 576,942 + ybcS b0555 0.21 +1.4 576,956 + ybcS b0555 0.24 +0.3 576,956 - ybcS b0555 0.24 -0.8 576,975 + ybcS b0555 0.28 -1.8 576,986 + ybcS b0555 0.30 +0.8 576,986 + ybcS b0555 0.30 -0.8 576,989 - ybcS b0555 0.31 -1.1 576,990 + ybcS b0555 0.31 +0.3 576,990 + ybcS b0555 0.31 -1.6 576,990 + ybcS b0555 0.31 +0.3 576,990 + ybcS b0555 0.31 -0.1 576,990 + ybcS b0555 0.31 +0.1 576,994 - ybcS b0555 0.32 +2.3 576,994 - ybcS b0555 0.32 +0.5 576,994 - ybcS b0555 0.32 -1.5 577,024 - ybcS b0555 0.38 -1.1 577,057 + ybcS b0555 0.44 +2.8 577,072 + ybcS b0555 0.47 +0.8 577,077 - ybcS b0555 0.48 -1.4 577,117 + ybcS b0555 0.56 -0.2 577,145 - ybcS b0555 0.62 +0.6 577,146 + ybcS b0555 0.62 -0.2 577,146 + ybcS b0555 0.62 +1.0 577,156 - ybcS b0555 0.64 -1.0 577,205 + ybcS b0555 0.74 +1.5 577,227 + ybcS b0555 0.79 +0.8 577,232 + ybcS b0555 0.80 +1.5 577,243 - ybcS b0555 0.82 +2.0 577,243 - ybcS b0555 0.82 -0.6 577,285 - +1.1 577,337 + +1.0 577,337 + +0.4 577,384 - rzpD b0556 0.12 -1.7 577,384 - rzpD b0556 0.12 +0.4 577,386 + rzpD b0556 0.12 +1.0 577,394 - rzpD b0556 0.14 -0.8 577,394 - rzpD b0556 0.14 -0.6 577,405 - rzpD b0556 0.16 -0.7 577,408 - rzpD b0556 0.17 +0.3 577,662 + +0.1 577,721 + +0.3 577,728 + -0.2 577,767 + -1.0 577,767 + +0.2 577,786 + -0.3 577,786 + -2.2 577,787 + +2.0 577,791 + +0.1 577,794 - -1.9 577,797 + +1.8 577,798 + -2.0 577,799 - -1.5 577,804 - -0.9 577,814 + -0.4 577,830 + -1.5 577,835 + -2.9 577,835 + +1.2 577,835 + +1.5 577,835 + -1.1
Or see this region's nucleotide sequence