Strain Fitness in Pseudomonas putida KT2440 around PP_5695

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
5,147,280	+		PP_4533	0.29	-1.2
5,147,280	+		PP_4533	0.29	-0.3
5,147,280	+		PP_4533	0.29	-0.7
5,147,280	+		PP_4533	0.29	-0.8
5,147,280	+		PP_4533	0.29	+0.1
5,147,280	+		PP_4533	0.29	+0.2
5,147,281	-		PP_4533	0.30	+0.7
5,147,281	-		PP_4533	0.30	-0.4
5,147,281	-		PP_4533	0.30	-0.0
5,147,281	-		PP_4533	0.30	-0.5
5,147,281	-		PP_4533	0.30	-0.2
5,147,281	-		PP_4533	0.30	-0.1
5,147,281	-		PP_4533	0.30	-0.1
5,147,281	-		PP_4533	0.30	+0.4
5,147,281	-		PP_4533	0.30	-0.1
5,147,322	+		PP_4533	0.33	+0.5
5,147,323	-		PP_4533	0.33	-0.1
5,147,323	-		PP_4533	0.33	+0.3
5,147,437	+		PP_4533	0.42	-0.6
5,147,438	-		PP_4533	0.42	+0.2
5,147,451	+		PP_4533	0.43	+0.3
5,147,452	-		PP_4533	0.43	+1.4
5,147,452	-		PP_4533	0.43	+0.0
5,147,542	+		PP_4533	0.50	-0.3
5,147,542	+		PP_4533	0.50	-0.2
5,147,543	-		PP_4533	0.50	-0.5
5,147,543	-		PP_4533	0.50	+0.0
5,147,997	+		PP_4533	0.85	+0.6
5,148,061	-		PP_4533	0.89	+0.3
5,148,226	-				+0.1
5,148,271	+				-1.1
5,148,272	-				+0.0
5,148,272	-				-0.3
5,148,334	+		PP_5695	0.24	+0.1
5,148,334	+		PP_5695	0.24	+2.0
5,148,351	+		PP_5695	0.30	+0.6
5,148,351	+		PP_5695	0.30	+0.7
5,148,351	+		PP_5695	0.30	+0.5
5,148,400	+		PP_5695	0.48	+0.6
5,148,493	+		PP_5695	0.83	+0.8
5,148,493	+		PP_5695	0.83	+0.1
5,148,493	+		PP_5695	0.83	+0.7
5,148,494	-		PP_5695	0.83	+0.1
5,148,494	-		PP_5695	0.83	+0.5
5,148,547	+				-0.8
5,148,547	+				-0.7
5,148,547	+				+0.1
5,148,547	+				-0.9
5,148,548	-				+0.1
5,148,548	-				-0.4
5,148,548	-				-0.3
5,148,548	-				+0.1
5,148,548	-				-1.4
5,148,805	-		PP_4534	0.70	-1.4
5,148,805	-		PP_4534	0.70	-0.7
5,148,805	-		PP_4534	0.70	-1.0
5,148,849	+		PP_4534	0.88	+0.4
5,148,849	+		PP_4534	0.88	-0.4
5,148,850	-		PP_4534	0.88	-0.6
5,148,850	-		PP_4534	0.88	-0.4
5,148,882	+				-0.3
5,148,882	+				-0.5
5,148,883	-				+0.3
5,148,883	-				+0.1
5,148,907	-				+0.5
5,149,019	+				+1.0
5,149,020	-				-0.4
5,149,020	-				+0.0
5,149,020	-				-0.3
5,149,020	-				-0.2
5,149,020	-				-0.4
5,149,020	-				+0.1
5,149,025	+				+0.4
5,149,025	+				+1.7
5,149,025	+				-0.7
5,149,026	-				+0.9
5,149,026	-				-0.9
5,149,026	-				+0.4
5,149,026	-				-0.3
5,149,026	-				-0.4
5,149,026	-				-0.3
5,149,026	-				+0.6
5,149,026	-				+0.0
5,149,089	+				+0.3
5,149,090	-				-0.7
5,149,124	+				+0.1
5,149,124	+				-1.2
5,149,125	-				+0.6
5,149,125	-				+0.3
5,149,125	-				+0.0
5,149,142	+				+0.1
5,149,143	-				-0.0
5,149,194	+				-0.9
5,149,215	-				-0.0
5,149,253	+				+2.0
5,149,254	-				+1.0
5,149,261	-				+0.0
5,149,288	+				-0.1
5,149,288	+				+0.8
5,149,289	-				-1.3
5,149,289	-				+0.6
5,149,289	-				-0.1
5,149,289	-				+1.1
5,149,289	-				+0.4
5,149,289	-				+0.5
5,149,292	+				+0.1
5,149,292	+				-0.2
5,149,293	-				+0.1
5,149,293	-				+0.4
5,149,293	-				+0.0
5,149,348	+				-1.7
5,149,348	+				-0.1
5,149,349	-				-0.3
5,149,349	-				+0.3
5,149,351	+				-0.6
5,149,351	+				-0.1
5,149,351	+				+0.2
5,149,351	+				+0.4
5,149,352	-				+0.1
5,149,352	-				-0.1
5,149,352	-				+0.9
5,149,352	-				-1.3
5,149,355	+				+1.2
5,149,355	+				-1.7
5,149,356	-				+0.4
5,149,356	-				+0.1
5,149,356	-				-0.1
5,149,356	-				+0.1
5,149,356	-				-0.3
5,149,356	-				+1.5
5,149,356	-				+0.3
5,149,356	-				-0.9
5,149,356	-				+0.7
5,149,378	+				+0.7
5,149,378	+				-0.3
5,149,520	+				+0.7
5,149,520	+				+0.5
5,149,520	+				-0.0
5,149,520	+				+0.0
5,149,520	+				-2.1
5,149,520	+				+1.7
5,149,520	+				-0.1
5,149,521	-				-1.3
5,149,521	-				+0.6
5,149,521	-				-0.2
5,149,521	-				+0.2
5,149,521	-				+0.3
5,149,521	-				+0.0