Strain Fitness in Pseudomonas putida KT2440 around PP_5618

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
4,194,754	+		PP_5617	0.87	+0.5
4,194,754	+		PP_5617	0.87	-0.3
4,194,754	+		PP_5617	0.87	-1.4
4,194,754	+		PP_5617	0.87	+0.8
4,194,754	+		PP_5617	0.87	+0.1
4,194,851	-				-0.7
4,194,909	-				-0.5
4,194,909	-				-0.5
4,194,918	+				-0.4
4,194,922	+				-1.4
4,194,922	+				-1.9
4,194,922	+				+0.2
4,194,922	+				-0.4
4,194,922	+				+0.2
4,194,923	-				+0.3
4,195,006	-				+0.5
4,195,056	+		PP_3688	0.12	-0.2
4,195,056	+		PP_3688	0.12	-0.8
4,195,057	-		PP_3688	0.12	-0.0
4,195,258	+		PP_3688	0.40	+0.1
4,195,439	+		PP_3688	0.66	-0.7
4,195,452	-		PP_3688	0.68	+0.3
4,195,481	+		PP_3688	0.72	+0.2
4,195,487	-		PP_3688	0.73	-1.2
4,195,532	+		PP_3688	0.80	-0.7
4,195,532	+		PP_3688	0.80	+1.2
4,195,532	+		PP_3688	0.80	+0.3
4,195,533	-		PP_3688	0.80	+0.2
4,195,533	-		PP_3688	0.80	+0.7
4,195,533	-		PP_3688	0.80	+0.2
4,195,533	-		PP_3688	0.80	-0.3
4,195,533	-		PP_3688	0.80	+0.4
4,195,535	-		PP_3688	0.80	+0.2
4,195,560	+		PP_3688	0.84	-0.7
4,195,560	+		PP_3688	0.84	+0.2
4,195,561	-		PP_3688	0.84	-1.3
4,195,561	-		PP_3688	0.84	+0.8
4,195,561	-		PP_3688	0.84	+0.8
4,195,580	+				-0.9
4,195,580	+		PP_3688	0.87	-0.1
4,195,580	+		PP_3688	0.87	-0.3
4,195,581	-		PP_3688	0.87	-0.5
4,195,586	-		PP_3688	0.87	+0.2
4,195,653	-				-0.2
4,195,711	+				-0.7
4,195,712	-				-0.3
4,195,902	+		PP_5618	0.43	-0.4
4,195,902	+		PP_5618	0.43	+1.1
4,195,902	+		PP_5618	0.43	-0.6
4,195,903	-		PP_5618	0.43	-0.1
4,195,903	-		PP_5618	0.43	+0.1
4,195,905	+		PP_5618	0.43	-0.7
4,195,906	-		PP_5618	0.43	-3.3
4,195,906	-		PP_5618	0.43	-0.6
4,195,927	+		PP_5618	0.48	-0.8
4,195,927	+		PP_5618	0.48	+0.4
4,195,928	-				+0.4
4,195,928	-		PP_5618	0.48	-1.2
4,195,928	-		PP_5618	0.48	-0.0
4,195,928	-		PP_5618	0.48	-0.5
4,195,928	-		PP_5618	0.48	-0.3
4,195,953	+		PP_5618	0.54	-0.5
4,195,953	+		PP_5618	0.54	-0.0
4,195,953	+				+2.4
4,195,954	-		PP_5618	0.54	-0.1
4,195,954	-				-0.8
4,196,001	+		PP_5618	0.65	-0.7
4,196,001	+		PP_5618	0.65	-0.2
4,196,001	+		PP_5618	0.65	-0.1
4,196,002	-		PP_5618	0.65	-0.4
4,196,087	-		PP_5618	0.84	-0.2
4,196,121	+				-0.6
4,196,121	+				+2.7
4,196,137	+				+0.9
4,196,162	+				+0.7
4,196,162	+				-0.5
4,196,163	-				+0.7
4,196,185	+				-0.6
4,196,186	-				+0.3
4,196,437	+				-0.1
4,196,437	+				+0.2
4,196,437	+				+0.4
4,196,437	+				-0.2
4,196,437	+				+0.3
4,196,438	-				+0.2
4,196,438	-				+0.5
4,196,466	+				+1.4
4,196,466	+				+0.0
4,196,466	+				-0.9
4,196,467	-				-0.4
4,196,474	+				-0.3
4,196,475	-				+1.4
4,196,538	+				-0.6
4,196,539	-				+0.2
4,196,561	-		PP_5619	0.14	-0.4
4,196,680	+		PP_5619	0.63	-0.8
4,196,681	-		PP_5619	0.63	-1.3
4,196,696	+		PP_5619	0.70	+0.3
4,196,867	+				+0.8
4,196,872	+				+0.8
4,196,883	+				+0.8
4,196,883	+				+0.5
4,196,933	+				+0.4
4,196,937	+				-0.4
4,196,938	-				-0.7
4,196,938	-				+0.1
4,197,000	+				+0.9
4,197,000	+				-1.0
4,197,001	-				-0.1
4,197,001	-				+0.4
4,197,074	-				-1.0
4,197,081	+				-0.8
4,197,086	+				+0.0
4,197,134	+				-0.3
4,197,146	-				+0.9