Strain Fitness in Pseudomonas putida KT2440 around PP_5477

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
2,034,628	+				+0.6
2,034,628	+				+0.2
2,034,655	+				-0.9
2,034,656	-				-0.9
2,034,661	-				-0.0
2,034,661	-				+0.3
2,034,670	+				-1.1
2,034,670	+				-0.1
2,034,670	+				-0.6
2,034,671	-				+0.3
2,034,689	-				-0.0
2,034,695	-				-1.2
2,034,695	-				-0.2
2,034,780	+				-0.2
2,034,780	+				-0.5
2,034,781	-				+0.2
2,034,781	-				-0.0
2,034,789	+				+0.1
2,034,790	-				-1.1
2,034,790	-				-1.1
2,034,790	-				-1.1
2,034,790	-				-0.4
2,034,793	+				+0.1
2,034,793	+				-1.2
2,034,793	+				+0.2
2,034,793	+				+0.5
2,034,794	-				-1.3
2,034,794	-				-0.3
2,034,794	-				+0.4
2,034,849	+				-0.5
2,034,850	-				-0.8
2,034,850	-				+0.7
2,035,046	-				+0.3
2,035,073	+				+0.9
2,035,073	+				-1.7
2,035,074	-				-0.1
2,035,074	-				+0.2
2,035,074	-				-0.3
2,035,076	+				-1.8
2,035,076	+				-0.1
2,035,110	+				-0.9
2,035,110	+				+1.1
2,035,111	-				-0.4
2,035,111	-				-1.8
2,035,117	+				-1.6
2,035,117	+				-0.1
2,035,118	-				-0.9
2,035,176	+				-0.8
2,035,192	-				+1.8
2,035,192	-				-0.2
2,035,193	+				+0.4
2,035,193	+				+0.5
2,035,194	-				+0.5
2,035,194	-				+0.6
2,035,248	+				-1.8
2,035,249	-				-0.6
2,035,249	-				-1.5
2,035,275	+				-0.3
2,035,276	-				+0.5
2,035,351	+				+1.4
2,035,352	-				+0.2
2,035,382	-				-0.5
2,035,382	-				+0.2
2,035,399	+				+0.7
2,035,496	+				+0.2
2,035,496	+				-0.1
2,035,496	+				+0.1
2,035,497	-				-0.3
2,035,497	-				+0.7
2,035,497	-				-0.6
2,035,511	+				-0.3
2,035,512	-				+0.7
2,035,579	+				+1.0
2,035,579	+				+0.3
2,035,580	-				-1.5
2,035,580	-				+1.1
2,035,601	-				+0.2
2,035,609	+				+0.1
2,035,622	-				+0.1
2,035,686	+		PP_5477	0.16	+1.0
2,035,687	-		PP_5477	0.16	-0.3
2,035,862	+		PP_5477	0.61	+0.1
2,035,873	+		PP_5477	0.64	+0.4
2,035,874	-		PP_5477	0.64	-2.4
2,035,874	-		PP_5477	0.64	+0.5
2,035,874	-		PP_5477	0.64	-0.0
2,035,882	-		PP_5477	0.66	+0.5
2,035,967	+		PP_5477	0.88	+1.1
2,035,968	-		PP_5477	0.88	+1.6
2,035,978	+				-0.2
2,035,978	+				+0.9
2,035,978	+				-0.5
2,035,978	+				+0.7
2,035,979	-				-1.8
2,036,004	+				-0.6
2,036,044	+				-0.1
2,036,044	+				+0.8
2,036,044	+				+0.3
2,036,044	+				-0.5
2,036,044	+				-0.2
2,036,044	+				-2.0
2,036,044	+				-0.2
2,036,044	+				+0.8
2,036,044	+				-0.4
2,036,045	-				+0.5
2,036,045	-				-0.4
2,036,045	-				+0.3
2,036,045	-				+0.4
2,036,045	-				+0.1
2,036,045	-				-0.5
2,036,045	-				+0.6
2,036,045	-				+0.0
2,036,045	-				-0.5
2,036,045	-				+0.1
2,036,045	-				-0.0
2,036,045	-				+0.8
2,036,045	-				+0.1
2,036,045	-				-0.1
2,036,085	-				+0.3
2,036,085	-				+0.2
2,036,146	+				-0.2
2,036,149	-				+0.1
2,036,149	-				+0.0
2,036,149	-				+0.2
2,036,174	+				-0.2
2,036,175	-				+0.1
2,036,192	+				+0.3
2,036,193	-				-0.7
2,036,220	-				-0.3
2,036,237	+				-0.5
2,036,238	-				+0.6
2,036,308	+				-2.8
2,036,308	+				-0.9
2,036,308	+				+0.3
2,036,398	+				-0.7
2,036,399	-				+0.2
2,036,417	-				-0.4
2,036,454	-				+0.4
2,036,544	-				+2.1
2,036,561	+				+0.0
2,036,561	+				+0.7
2,036,562	-				+0.4
2,036,562	-				-0.9
2,036,649	-				-0.1
2,036,670	-				-0.2
2,036,757	+		PP_1810	0.12	-0.3
2,036,766	+		PP_1810	0.13	-0.4
2,036,784	+		PP_1810	0.16	+0.1
2,036,785	-		PP_1810	0.16	+1.1
2,036,827	+		PP_1810	0.22	-0.8
2,036,827	+		PP_1810	0.22	+0.2
2,036,827	+		PP_1810	0.22	-2.2
2,036,828	-		PP_1810	0.22	+0.1
2,036,828	-		PP_1810	0.22	-1.0
2,036,891	-		PP_1810	0.30	-0.7
2,036,891	-		PP_1810	0.30	-0.2
2,036,893	+		PP_1810	0.31	+0.1
2,036,893	+		PP_1810	0.31	-0.6
2,036,894	-		PP_1810	0.31	-0.1
2,036,894	-		PP_1810	0.31	-0.4