Strain Fitness in Pseudomonas putida KT2440 around PP_4759

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
5,418,404	+		PP_4758	0.51	-0.8
5,418,404	+		PP_4758	0.51	+0.3
5,418,405	-		PP_4758	0.51	+0.2
5,418,405	-		PP_4758	0.51	-0.2
5,418,643	+		PP_4758	0.69	+1.5
5,418,643	+		PP_4758	0.69	+0.4
5,418,703	+		PP_4758	0.73	-1.3
5,418,703	+		PP_4758	0.73	+0.0
5,418,704	-		PP_4758	0.73	+0.2
5,418,704	-		PP_4758	0.73	-1.0
5,418,704	-		PP_4758	0.73	+0.7
5,418,767	+		PP_4758	0.78	-0.3
5,418,767	+		PP_4758	0.78	-0.2
5,418,768	-		PP_4758	0.78	-0.6
5,418,768	-		PP_4758	0.78	-0.0
5,418,868	+		PP_4758	0.85	+1.1
5,418,868	+		PP_4758	0.85	+1.0
5,418,868	+		PP_4758	0.85	-0.4
5,418,940	+				-0.4
5,419,071	+				+0.2
5,419,072	-				-0.3
5,419,122	+				+0.0
5,419,175	+				-1.3
5,419,194	-				+0.6
5,419,227	-				-0.8
5,419,534	-		PP_4759	0.31	-0.1
5,419,534	-		PP_4759	0.31	-0.3
5,419,620	+		PP_4759	0.43	-1.2
5,419,621	-		PP_4759	0.44	+0.2
5,419,708	+		PP_4759	0.56	-1.3
5,419,708	+		PP_4759	0.56	+0.2
5,419,708	+		PP_4759	0.56	+0.8
5,419,709	-		PP_4759	0.56	-0.3
5,419,709	-		PP_4759	0.56	+1.1
5,419,709	-		PP_4759	0.56	+0.5
5,419,709	-		PP_4759	0.56	-0.3
5,419,709	-		PP_4759	0.56	+0.6
5,419,795	+		PP_4759	0.68	+0.5
5,419,796	-		PP_4759	0.69	+1.4
5,419,895	-		PP_4759	0.83	-0.6
5,419,895	-		PP_4759	0.83	+0.0
5,420,004	-				+0.5
5,420,030	+				+0.5
5,420,030	+				+0.9
5,420,030	+				-0.4
5,420,031	-				+0.4
5,420,031	-				-0.9
5,420,039	+				+1.1
5,420,039	+				-1.9
5,420,039	+				+0.1
5,420,040	-				-0.4
5,420,040	-				+0.5
5,420,040	-				+0.3
5,420,041	+				-1.0
5,420,041	+				+0.1
5,420,042	-				-1.2
5,420,042	-				+0.2
5,420,042	-				-1.7
5,420,042	-				+0.1
5,420,063	+				+0.5
5,420,063	+				-0.1
5,420,063	+				+0.3
5,420,064	-				+0.7
5,420,073	+				-0.3
5,420,074	-				+0.1
5,420,215	-		PP_4760	0.13	-0.2
5,420,215	-		PP_4760	0.13	-1.1
5,420,467	+		PP_4760	0.37	+0.3
5,420,467	+		PP_4760	0.37	-0.4
5,420,468	-		PP_4760	0.38	-1.3
5,420,971	+		PP_4760	0.87	-0.2
5,420,972	-		PP_4760	0.87	+1.2