Strain Fitness in Pseudomonas putida KT2440 around PP_4178

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
4,720,045	-		PP_4177	0.17	+0.3
4,720,045	-		PP_4177	0.17	+0.9
4,720,045	-		PP_4177	0.17	+0.7
4,720,108	-		PP_4177	0.24	-0.5
4,720,270	+		PP_4177	0.43	-0.0
4,720,270	+		PP_4177	0.43	+0.2
4,720,314	+		PP_4177	0.48	-0.8
4,720,314	+		PP_4177	0.48	+0.2
4,720,315	-		PP_4177	0.48	+1.7
4,720,367	+		PP_4177	0.54	+0.7
4,720,367	+		PP_4177	0.54	-0.4
4,720,368	-		PP_4177	0.54	-0.5
4,720,368	-		PP_4177	0.54	+0.6
4,720,368	-		PP_4177	0.54	-1.9
4,720,368	-		PP_4177	0.54	+0.6
4,720,434	+		PP_4177	0.61	+0.4
4,720,435	-		PP_4177	0.61	+0.4
4,720,435	-		PP_4177	0.61	-0.8
4,720,435	-		PP_4177	0.61	+0.3
4,720,503	+		PP_4177	0.69	-0.5
4,720,503	+		PP_4177	0.69	+0.1
4,720,504	-		PP_4177	0.69	-0.2
4,720,504	-		PP_4177	0.69	-1.3
4,720,508	-		PP_4177	0.70	-0.1
4,720,593	+		PP_4177	0.79	+0.3
4,720,593	+		PP_4177	0.79	-0.7
4,720,593	+		PP_4177	0.79	+0.6
4,720,593	+		PP_4177	0.79	-1.1
4,720,593	+		PP_4177	0.79	+1.1
4,720,594	-		PP_4177	0.79	-0.3
4,720,594	-		PP_4177	0.79	+0.8
4,720,765	+				-0.1
4,720,899	+				+0.3
4,720,940	+				+0.3
4,720,959	+		PP_4178	0.12	-0.2
4,720,960	-		PP_4178	0.12	+0.6
4,721,396	+		PP_4178	0.72	+0.7
4,721,396	+		PP_4178	0.72	+1.0
4,721,396	+		PP_4178	0.72	+0.0
4,721,397	-		PP_4178	0.73	+0.5
4,721,420	+		PP_4178	0.76	+0.3
4,721,525	+				-0.1
4,721,525	+				-0.5
4,721,526	-				-1.4
4,721,543	+				-0.7
4,721,543	+				-0.0
4,721,543	+				+0.3
4,721,584	+				+0.5
4,721,680	+				+0.4
4,721,681	-				+0.6
4,721,681	-				-0.2
4,721,703	-				+0.6
4,721,703	-				+1.3
4,722,134	+		PP_4179	0.25	+0.8
4,722,251	+		PP_4179	0.31	-0.6
4,722,251	+		PP_4179	0.31	-1.5
4,722,251	+		PP_4179	0.31	+1.0
4,722,252	-		PP_4179	0.31	+0.8
4,722,254	+		PP_4179	0.31	-0.1
4,722,254	+		PP_4179	0.31	-0.4
4,722,254	+		PP_4179	0.31	+1.3
4,722,255	-		PP_4179	0.31	+0.3
4,722,255	-		PP_4179	0.31	+0.6
4,722,255	-		PP_4179	0.31	+0.6
4,722,255	-		PP_4179	0.31	-0.2
4,722,255	-		PP_4179	0.31	-0.0
4,722,255	-		PP_4179	0.31	+0.4
4,722,255	-		PP_4179	0.31	-1.0
4,722,290	+		PP_4179	0.33	+0.4
4,722,290	+		PP_4179	0.33	-0.3