Strain Fitness in Pseudomonas putida KT2440 around PP_4040

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4038 and PP_4039 are separated by 180 nucleotidesPP_4039 and PP_4040 are separated by 97 nucleotidesPP_4040 and PP_4041 are separated by 66 nucleotides PP_4038: PP_4038 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data), at 4,550,632 to 4,551,906 _4038 PP_4039: PP_4039 - transcriptional regulator, TetR family, at 4,552,087 to 4,552,608 _4039 PP_4040: PP_4040 - putative enzyme of the glyoxalase family, at 4,552,706 to 4,553,062 _4040 PP_4041: PP_4041 - putative glycoside hydrolase, at 4,553,129 to 4,554,925 _4041 Position (kb) 4552 4553 4554Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4551.754 kb on + strand, within PP_4038at 4551.754 kb on + strand, within PP_4038at 4551.754 kb on + strand, within PP_4038at 4551.755 kb on - strand, within PP_4038at 4551.755 kb on - strand, within PP_4038at 4551.755 kb on - strand, within PP_4038at 4551.779 kb on + strandat 4551.780 kb on - strandat 4551.780 kb on - strandat 4551.786 kb on + strandat 4551.787 kb on - strandat 4552.003 kb on - strandat 4552.211 kb on + strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.237 kb on - strand, within PP_4039at 4552.237 kb on - strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strandat 4552.238 kb on + strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.269 kb on + strand, within PP_4039at 4552.269 kb on + strand, within PP_4039at 4552.439 kb on + strand, within PP_4039at 4552.556 kb on + strandat 4552.556 kb on + strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.560 kb on - strandat 4552.560 kb on - strandat 4552.670 kb on + strandat 4552.854 kb on + strand, within PP_4040at 4552.855 kb on - strand, within PP_4040at 4552.938 kb on + strand, within PP_4040at 4552.939 kb on - strand, within PP_4040at 4552.973 kb on + strand, within PP_4040at 4552.974 kb on - strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.091 kb on + strandat 4553.091 kb on + strandat 4553.091 kb on + strandat 4553.092 kb on - strandat 4553.096 kb on + strandat 4553.201 kb on + strandat 4553.201 kb on + strandat 4553.202 kb on - strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.308 kb on - strandat 4553.308 kb on - strandat 4553.346 kb on + strand, within PP_4041at 4553.347 kb on - strand, within PP_4041at 4553.347 kb on - strand, within PP_4041at 4553.427 kb on + strand, within PP_4041at 4553.562 kb on + strand, within PP_4041at 4553.562 kb on + strand, within PP_4041at 4553.563 kb on - strand, within PP_4041at 4553.791 kb on + strand, within PP_4041at 4553.791 kb on + strand, within PP_4041at 4553.792 kb on - strand, within PP_4041at 4553.792 kb on - strand, within PP_4041at 4553.802 kb on + strand, within PP_4041at 4553.803 kb on - strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strandat 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.040 kb on + strand, within PP_4041

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-butenol (commercial) 0.25 vol%
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4,551,754 + PP_4038 0.88 -1.0
4,551,754 + PP_4038 0.88 -0.9
4,551,754 + PP_4038 0.88 -0.5
4,551,755 - PP_4038 0.88 +0.5
4,551,755 - PP_4038 0.88 +0.2
4,551,755 - PP_4038 0.88 -0.3
4,551,779 + +0.8
4,551,780 - -0.6
4,551,780 - +0.5
4,551,786 + +0.2
4,551,787 - -0.1
4,552,003 - -0.9
4,552,211 + PP_4039 0.24 -0.3
4,552,212 - PP_4039 0.24 -0.9
4,552,212 - PP_4039 0.24 +0.5
4,552,212 - PP_4039 0.24 -1.7
4,552,212 - PP_4039 0.24 +0.8
4,552,236 + PP_4039 0.29 -0.2
4,552,236 + PP_4039 0.29 +0.1
4,552,236 + PP_4039 0.29 +1.0
4,552,236 + PP_4039 0.29 -1.3
4,552,236 + PP_4039 0.29 -1.2
4,552,236 + PP_4039 0.29 +0.8
4,552,236 + PP_4039 0.29 -0.1
4,552,237 - PP_4039 0.29 +0.0
4,552,237 - PP_4039 0.29 -0.8
4,552,238 + PP_4039 0.29 +1.4
4,552,238 + PP_4039 0.29 -0.5
4,552,238 + PP_4039 0.29 +0.3
4,552,238 + PP_4039 0.29 +0.6
4,552,238 + PP_4039 0.29 +0.6
4,552,238 + PP_4039 0.29 -0.6
4,552,238 + -0.8
4,552,238 + PP_4039 0.29 +0.2
4,552,239 - PP_4039 0.29 +0.8
4,552,239 - PP_4039 0.29 -0.0
4,552,239 - PP_4039 0.29 -0.2
4,552,239 - PP_4039 0.29 -0.4
4,552,269 + PP_4039 0.35 -0.9
4,552,269 + PP_4039 0.35 -0.1
4,552,439 + PP_4039 0.67 -1.2
4,552,556 + -0.1
4,552,556 + -0.9
4,552,557 - +0.0
4,552,557 - +0.2
4,552,557 - +0.0
4,552,557 - -1.1
4,552,557 - -0.5
4,552,560 - +0.4
4,552,560 - +0.6
4,552,670 + -0.6
4,552,854 + PP_4040 0.41 +1.3
4,552,855 - PP_4040 0.42 -0.7
4,552,938 + PP_4040 0.65 +1.7
4,552,939 - PP_4040 0.65 -0.4
4,552,973 + PP_4040 0.75 +0.4
4,552,974 - PP_4040 0.75 +1.0
4,552,983 + PP_4040 0.78 +1.0
4,552,983 + PP_4040 0.78 +1.0
4,552,983 + PP_4040 0.78 +1.1
4,552,983 + PP_4040 0.78 +0.3
4,552,984 - PP_4040 0.78 +0.3
4,552,984 - PP_4040 0.78 +0.6
4,552,984 - PP_4040 0.78 -0.9
4,552,984 - PP_4040 0.78 +0.4
4,552,984 - PP_4040 0.78 -1.2
4,553,064 + +0.4
4,553,064 + -0.0
4,553,064 + -0.2
4,553,064 + -0.2
4,553,064 + +0.3
4,553,064 + +0.2
4,553,064 + +0.7
4,553,064 + +0.1
4,553,064 + -0.0
4,553,064 + +0.3
4,553,064 + -0.5
4,553,064 + -1.0
4,553,064 + +1.4
4,553,065 - +0.7
4,553,065 - -1.0
4,553,065 - -0.3
4,553,065 - -1.6
4,553,091 + +0.2
4,553,091 + -0.7
4,553,091 + -0.3
4,553,092 - -0.6
4,553,096 + +0.2
4,553,201 + +0.4
4,553,201 + +0.0
4,553,202 - -0.0
4,553,256 + +0.3
4,553,256 + -0.6
4,553,256 + +0.4
4,553,256 + -0.3
4,553,308 - -0.0
4,553,308 - +1.5
4,553,346 + PP_4041 0.12 +0.7
4,553,347 - PP_4041 0.12 +0.1
4,553,347 - PP_4041 0.12 +0.1
4,553,427 + PP_4041 0.17 +0.3
4,553,562 + PP_4041 0.24 +0.8
4,553,562 + PP_4041 0.24 -0.4
4,553,563 - PP_4041 0.24 +0.5
4,553,791 + PP_4041 0.37 -0.9
4,553,791 + PP_4041 0.37 +0.7
4,553,792 - PP_4041 0.37 -0.3
4,553,792 - PP_4041 0.37 -0.0
4,553,802 + PP_4041 0.37 +0.2
4,553,803 - PP_4041 0.38 -0.1
4,553,810 + PP_4041 0.38 +0.7
4,553,810 + PP_4041 0.38 +0.3
4,553,810 + PP_4041 0.38 +0.8
4,553,895 + PP_4041 0.43 -0.6
4,553,895 + PP_4041 0.43 -0.3
4,553,895 + PP_4041 0.43 -0.8
4,553,895 + PP_4041 0.43 -0.3
4,553,896 - PP_4041 0.43 -0.2
4,553,896 - PP_4041 0.43 +0.0
4,553,896 - PP_4041 0.43 -0.2
4,553,896 - PP_4041 0.43 -0.8
4,553,896 - PP_4041 0.43 +1.1
4,553,896 - PP_4041 0.43 +0.7
4,553,982 + PP_4041 0.47 -0.2
4,553,982 + PP_4041 0.47 +1.0
4,553,982 + PP_4041 0.47 +1.0
4,553,982 + +2.9
4,553,982 + PP_4041 0.47 +0.6
4,553,982 + PP_4041 0.47 -0.0
4,553,982 + PP_4041 0.47 +0.8
4,553,982 + PP_4041 0.47 +0.4
4,553,983 - PP_4041 0.48 -0.5
4,553,983 - PP_4041 0.48 +0.2
4,553,983 - PP_4041 0.48 -0.9
4,553,983 - PP_4041 0.48 +0.3
4,553,983 - PP_4041 0.48 +0.4
4,554,015 + PP_4041 0.49 +0.5
4,554,015 + PP_4041 0.49 +0.8
4,554,015 + PP_4041 0.49 +0.5
4,554,015 + PP_4041 0.49 +0.1
4,554,016 - PP_4041 0.49 +1.4
4,554,016 - PP_4041 0.49 +0.7
4,554,016 - PP_4041 0.49 -1.8
4,554,040 + PP_4041 0.51 +0.7

Or see this region's nucleotide sequence