Strain Fitness in Pseudomonas putida KT2440 around PP_3374

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
3,818,512	+		PP_3373	0.63	-0.3
3,818,530	+		PP_3373	0.64	-0.1
3,818,533	+		PP_3373	0.64	+0.5
3,818,534	-		PP_3373	0.64	-0.4
3,818,603	-		PP_3373	0.67	-0.5
3,818,644	+		PP_3373	0.69	+0.4
3,818,644	+		PP_3373	0.69	+0.3
3,818,663	-		PP_3373	0.70	+0.2
3,818,747	+		PP_3373	0.73	+1.1
3,818,747	+		PP_3373	0.73	+0.2
3,818,935	+		PP_3373	0.81	-0.3
3,818,935	+		PP_3373	0.81	+1.1
3,818,936	-		PP_3373	0.81	+0.5
3,818,936	-		PP_3373	0.81	+0.8
3,818,936	-		PP_3373	0.81	+0.6
3,818,944	+		PP_3373	0.81	+0.3
3,818,944	+		PP_3373	0.81	+0.4
3,818,945	-		PP_3373	0.82	-0.2
3,819,046	+		PP_3373	0.86	+0.8
3,819,046	+				+0.3
3,819,046	+		PP_3373	0.86	-0.6
3,819,047	-		PP_3373	0.86	+0.7
3,819,047	-		PP_3373	0.86	-0.6
3,819,047	-		PP_3373	0.86	+0.7
3,819,047	-		PP_3373	0.86	+0.1
3,819,047	-		PP_3373	0.86	-1.3
3,819,047	-		PP_3373	0.86	+1.1
3,819,050	-		PP_3373	0.86	-0.1
3,819,110	-		PP_3373	0.88	-0.1
3,819,110	-		PP_3373	0.88	-0.2
3,819,184	+				-0.1
3,819,185	-				-1.1
3,819,199	+				+1.0
3,819,366	-				-0.9
3,819,424	+				-0.4
3,819,445	+				-0.6
3,819,538	+				+0.4
3,819,561	+		PP_3374	0.13	+0.3
3,819,561	+		PP_3374	0.13	+0.5
3,819,631	-		PP_3374	0.31	+0.5
3,819,668	+		PP_3374	0.41	+0.7
3,819,668	+		PP_3374	0.41	+0.6
3,819,716	+				+0.3
3,819,716	+		PP_3374	0.53	-0.6
3,819,717	-		PP_3374	0.53	+0.5
3,819,875	-				-0.3
3,819,932	+				-0.5
3,819,941	+				-0.1
3,819,942	-				+0.0
3,820,022	-				+2.8
3,820,057	+		PP_3375	0.15	-0.9
3,820,057	+		PP_3375	0.15	+0.0
3,820,057	+		PP_3375	0.15	-0.6
3,820,336	+		PP_3375	0.44	-1.3
3,820,336	+		PP_3375	0.44	+0.3
3,820,336	+		PP_3375	0.44	-1.0
3,820,337	-		PP_3375	0.44	-0.7
3,820,367	-		PP_3375	0.47	+0.0
3,820,367	-		PP_3375	0.47	+0.1
3,820,456	+		PP_3375	0.57	-1.6
3,820,456	+		PP_3375	0.57	-0.6
3,820,457	-		PP_3375	0.57	+0.7
3,820,457	-		PP_3375	0.57	-0.9
3,820,471	+		PP_3375	0.58	-0.9
3,820,655	+		PP_3375	0.77	-0.3
3,820,655	+		PP_3375	0.77	-0.1
3,820,756	+		PP_3375	0.88	-1.6
3,820,756	+		PP_3375	0.88	+0.9
3,820,756	+		PP_3375	0.88	-0.2
3,820,757	-		PP_3375	0.88	-0.3