Strain Fitness in Pseudomonas putida KT2440 around PP_3217

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
3,650,138	-				+0.0
3,650,170	+				+0.3
3,650,311	+		PP_3216	0.16	+0.0
3,650,311	+		PP_3216	0.16	+1.4
3,650,367	+		PP_3216	0.25	+0.1
3,650,367	+		PP_3216	0.25	+0.4
3,650,635	+		PP_3216	0.69	-0.2
3,650,635	+		PP_3216	0.69	-0.6
3,650,636	-		PP_3216	0.69	+0.7
3,650,636	-		PP_3216	0.69	+0.1
3,650,636	-		PP_3216	0.69	-0.6
3,651,001	+				-0.4
3,651,019	-				+0.8
3,651,049	+				+1.0
3,651,105	-				-0.9
3,651,126	-				-0.1
3,651,250	-		PP_3217	0.14	-0.4
3,651,250	-		PP_3217	0.14	+1.2
3,651,264	-		PP_3217	0.15	+0.8
3,651,264	-		PP_3217	0.15	+2.2
3,651,581	+		PP_3217	0.49	+0.5
3,651,582	-		PP_3217	0.49	-0.0
3,651,653	+		PP_3217	0.57	+0.4
3,651,653	+		PP_3217	0.57	-0.5
3,651,653	+		PP_3217	0.57	+0.6
3,651,653	+		PP_3217	0.57	-0.4
3,651,653	+		PP_3217	0.57	+0.7
3,651,654	-		PP_3217	0.57	+0.6
3,651,654	-		PP_3217	0.57	-0.4
3,651,654	-		PP_3217	0.57	+0.8
3,651,654	-		PP_3217	0.57	+0.3
3,651,654	-		PP_3217	0.57	+1.1
3,651,654	-		PP_3217	0.57	+0.6
3,651,842	+		PP_3217	0.77	-1.0
3,651,843	-		PP_3217	0.77	+0.8
3,652,051	+				+0.5
3,652,052	-				-0.1
3,652,055	+				+0.2
3,652,055	+				-0.1
3,652,056	-				+0.2
3,652,090	+				+0.6
3,652,091	-				-0.8
3,652,091	-				+0.9
3,652,091	-				-0.4
3,652,232	+				-0.8
3,652,232	+				+1.3
3,652,415	+		PP_3218	0.23	-1.0
3,652,416	-		PP_3218	0.23	+0.1
3,652,416	-		PP_3218	0.23	+1.3
3,652,527	-		PP_3218	0.31	-0.1
3,652,527	-		PP_3218	0.31	+0.4
3,652,544	+		PP_3218	0.33	-0.4
3,652,544	+		PP_3218	0.33	+0.5
3,652,544	+				+1.2
3,652,550	+				+1.2
3,652,551	-		PP_3218	0.33	-0.6
3,652,562	+		PP_3218	0.34	-0.1
3,652,859	+		PP_3218	0.56	+0.3
3,652,918	-		PP_3218	0.61	-0.8
3,652,937	+		PP_3218	0.62	+0.0
3,652,937	+		PP_3218	0.62	-0.2
3,652,938	-		PP_3218	0.62	+0.1
3,652,982	+		PP_3218	0.66	+0.6