Strain Fitness in Pseudomonas putida KT2440 around PP_3173

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
3,595,937	+				-0.3
3,596,035	+		PP_3173	0.12	+0.4
3,596,035	+		PP_3173	0.12	+0.8
3,596,102	+		PP_3173	0.18	-1.2
3,596,104	+		PP_3173	0.18	+0.9
3,596,105	-		PP_3173	0.18	-1.1
3,596,105	-		PP_3173	0.18	-0.5
3,596,134	+		PP_3173	0.21	+2.4
3,596,213	-		PP_3173	0.28	+0.5
3,596,455	+		PP_3173	0.50	-0.3
3,596,684	+				+1.2
3,596,684	+		PP_3173	0.71	-0.2
3,596,684	+		PP_3173	0.71	+0.6
3,596,684	+		PP_3173	0.71	+0.1
3,596,685	-		PP_3173	0.71	+0.3
3,596,878	+		PP_3173	0.88	+1.5
3,596,904	+				-0.5
3,596,905	-				+0.1
3,596,905	-				+0.8
3,597,129	+				-0.1
3,597,129	+				+0.6
3,597,130	-				-0.7
3,597,130	-				+1.0
3,597,130	-				-1.0
3,597,130	-				+0.6
3,597,130	-				+1.0
3,597,130	-				+0.7
3,597,211	+		PP_3174	0.11	+0.3
3,597,237	+		PP_3174	0.13	+0.4
3,597,237	+		PP_3174	0.13	+0.4
3,597,238	-		PP_3174	0.14	+1.0
3,597,238	-		PP_3174	0.14	+1.0
3,597,238	-				+1.7
3,597,241	+		PP_3174	0.14	+0.2
3,597,242	-		PP_3174	0.14	-0.8
3,597,351	+		PP_3174	0.25	-0.1
3,597,351	+		PP_3174	0.25	-0.2
3,597,351	+		PP_3174	0.25	-0.0
3,597,352	-		PP_3174	0.25	-0.2
3,597,465	+		PP_3174	0.36	-0.4
3,597,465	+		PP_3174	0.36	-0.5
3,597,466	-		PP_3174	0.36	+0.6
3,597,734	+				+2.2
3,597,759	+		PP_3174	0.65	+0.8
3,597,760	-		PP_3174	0.65	+0.6
3,597,762	+		PP_3174	0.65	+1.1
3,597,762	+		PP_3174	0.65	-1.2
3,597,762	+		PP_3174	0.65	+0.6
3,597,762	+		PP_3174	0.65	+0.2
3,597,763	-		PP_3174	0.65	-0.1
3,597,763	-		PP_3174	0.65	-0.5
3,597,763	-		PP_3174	0.65	-0.5
3,597,763	-		PP_3174	0.65	-0.1
3,597,763	-		PP_3174	0.65	+0.5
3,597,775	-		PP_3174	0.67	+0.4
3,597,954	+		PP_3174	0.84	-0.6
3,597,955	-		PP_3174	0.84	+1.0
3,597,955	-		PP_3174	0.84	-0.7