Strain Fitness in Pseudomonas putida KT2440 around PP_2885

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
3,282,136	+		PP_2883	0.23	-0.5
3,282,213	-		PP_2883	0.49	-0.4
3,282,456	+		PP_2884	0.16	+0.2
3,282,456	+		PP_2884	0.16	-1.0
3,282,456	+		PP_2884	0.16	-0.6
3,282,457	-		PP_2884	0.16	-1.4
3,282,457	-		PP_2884	0.16	-0.5
3,282,457	-		PP_2884	0.16	-0.5
3,282,459	+		PP_2884	0.17	-0.0
3,282,459	+		PP_2884	0.17	-0.9
3,282,588	+		PP_2884	0.40	-0.1
3,282,588	+		PP_2884	0.40	-0.9
3,282,589	-		PP_2884	0.40	+0.3
3,282,692	+		PP_2884	0.59	-0.6
3,282,693	-		PP_2884	0.60	-0.8
3,282,696	+		PP_2884	0.60	+0.3
3,282,924	+				-2.4
3,282,940	+				-0.5
3,282,943	+				-1.2
3,282,943	+				-0.7
3,282,961	-				-0.6
3,283,086	+				+0.7
3,283,087	-				-0.3
3,283,087	-				+0.7
3,283,087	-				-1.1
3,283,087	-				-0.3
3,283,096	+				-0.0
3,283,245	+		PP_2885	0.20	+0.8
3,283,246	-		PP_2885	0.20	+0.8
3,283,361	+		PP_2885	0.30	+1.2
3,283,362	-		PP_2885	0.30	-0.3
3,283,645	+		PP_2885	0.53	+0.3
3,283,791	+		PP_2885	0.65	+0.9
3,283,791	+		PP_2885	0.65	+0.9
3,283,918	-		PP_2885	0.75	+0.0
3,284,317	+				-0.7
3,284,318	-				-0.7
3,284,318	-				+0.8
3,284,397	+		PP_2886	0.22	-0.9
3,284,433	+		PP_2886	0.28	+0.7
3,284,433	+		PP_2886	0.28	+0.4
3,284,433	+		PP_2886	0.28	+0.6
3,284,434	-		PP_2886	0.28	-1.1
3,284,434	-		PP_2886	0.28	+2.7
3,284,434	-		PP_2886	0.28	+0.0
3,284,434	-		PP_2886	0.28	-0.6
3,284,435	+		PP_2886	0.29	+1.2
3,284,435	+		PP_2886	0.29	-0.1
3,284,435	+		PP_2886	0.29	-0.4
3,284,435	+		PP_2886	0.29	-0.1
3,284,435	+		PP_2886	0.29	+0.1
3,284,435	+		PP_2886	0.29	+0.5
3,284,435	+		PP_2886	0.29	+0.6
3,284,435	+		PP_2886	0.29	-0.9
3,284,435	+		PP_2886	0.29	-0.1
3,284,436	-		PP_2886	0.29	+0.0
3,284,436	-		PP_2886	0.29	-0.9
3,284,436	-		PP_2886	0.29	-0.2
3,284,436	-		PP_2886	0.29	-0.2
3,284,436	-		PP_2886	0.29	-0.5
3,284,542	-		PP_2886	0.49	+0.7
3,284,870	+				+1.8
3,284,915	-				+1.6
3,284,915	-				+0.3
3,284,915	-				+0.3
3,284,915	-				-0.4
3,284,981	-		PP_2887	0.16	-0.2
3,285,076	+		PP_2887	0.25	-1.3
3,285,076	+		PP_2887	0.25	-0.3
3,285,077	-		PP_2887	0.25	+0.1