Strain Fitness in Pseudomonas putida KT2440 around PP_2797

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
3,185,721	+		PP_2795	0.82	+0.5
3,185,943	+				-0.6
3,186,027	+				-0.4
3,186,027	+				+0.5
3,186,080	+				-1.0
3,186,081	-				-0.4
3,186,177	-		PP_2796	0.35	+0.4
3,186,182	+		PP_2796	0.36	-0.3
3,186,182	+		PP_2796	0.36	+0.3
3,186,183	-		PP_2796	0.36	-0.5
3,186,196	-		PP_2796	0.40	-0.7
3,186,308	+		PP_2796	0.75	+1.3
3,186,308	+		PP_2796	0.75	+0.8
3,186,309	-		PP_2796	0.75	+0.7
3,186,398	+				-1.2
3,186,628	+		PP_2797	0.15	-0.7
3,186,629	-		PP_2797	0.15	+0.1
3,186,670	+		PP_2797	0.17	-0.5
3,186,671	-		PP_2797	0.17	-0.3
3,186,671	-		PP_2797	0.17	-1.3
3,186,671	-		PP_2797	0.17	-0.7
3,186,691	+		PP_2797	0.18	-0.1
3,186,691	+		PP_2797	0.18	+0.5
3,186,691	+		PP_2797	0.18	-1.2
3,186,691	+		PP_2797	0.18	-0.2
3,186,691	+		PP_2797	0.18	+0.2
3,186,692	-		PP_2797	0.19	-0.1
3,186,692	-		PP_2797	0.19	+0.2
3,186,692	-		PP_2797	0.19	+0.2
3,186,697	+		PP_2797	0.19	-0.4
3,186,698	-		PP_2797	0.19	+0.2
3,186,862	+		PP_2797	0.29	+0.1
3,186,964	+		PP_2797	0.35	-0.4
3,186,965	-		PP_2797	0.35	-1.0
3,186,965	-		PP_2797	0.35	+0.2
3,186,965	-		PP_2797	0.35	-0.2
3,187,082	-		PP_2797	0.42	-0.1
3,187,280	-		PP_2797	0.54	-0.0
3,187,414	-		PP_2797	0.62	+0.2
3,187,552	+		PP_2797	0.70	+1.1
3,187,553	-		PP_2797	0.70	+0.1
3,187,553	-		PP_2797	0.70	+0.1
3,187,643	+		PP_2797	0.76	-1.5
3,187,882	-				+0.0
3,187,882	-				-0.1
3,187,882	-				+0.4
3,188,087	+				-0.3
3,188,095	+				-0.4
3,188,095	+				-0.2
3,188,096	-				-0.4
3,188,098	+				-0.3
3,188,099	-				+1.1
3,188,187	+				-0.3
3,188,246	+				+0.6
3,188,247	-				-0.5
3,188,266	+				-0.6
3,188,268	+				-0.4
3,188,268	+				-0.0
3,188,269	-				-0.4
3,188,269	-				-0.4
3,188,269	-				+0.9
3,188,269	-				+1.1
3,188,721	+		PP_2798	0.46	-0.0
3,188,822	+		PP_2798	0.57	+0.4
3,188,830	+		PP_2798	0.58	-0.3
3,188,830	+		PP_2798	0.58	-0.4
3,188,846	+		PP_2798	0.60	+0.2
3,188,912	+		PP_2798	0.67	+0.2
3,188,925	+		PP_2798	0.68	+0.9
3,188,925	+		PP_2798	0.68	+1.6