Strain Fitness in Pseudomonas putida KT2440 around PP_2333

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
2,660,263	-				+0.5
2,660,323	+				-0.5
2,660,342	+				-0.0
2,660,394	+				-1.0
2,660,395	-		PP_2332	0.10	+0.3
2,660,549	+		PP_2332	0.39	-0.8
2,660,573	+		PP_2332	0.43	+0.5
2,660,573	+		PP_2332	0.43	-1.3
2,660,573	+		PP_2332	0.43	-1.0
2,660,657	+		PP_2332	0.59	-1.0
2,660,658	-		PP_2332	0.59	+0.8
2,660,666	-		PP_2332	0.61	+0.7
2,660,784	-		PP_2332	0.82	+0.0
2,660,798	+		PP_2332	0.85	-0.3
2,660,798	+		PP_2332	0.85	-0.5
2,660,799	-		PP_2332	0.85	+0.2
2,660,799	-		PP_2332	0.85	+0.3
2,660,848	+				-1.2
2,660,848	+				-0.2
2,660,848	+				-0.5
2,660,849	-				-0.3
2,660,849	-				-0.5
2,660,849	-				-0.4
2,660,849	-				+0.1
2,660,857	+				-0.7
2,660,858	-				-0.2
2,660,858	-				+0.9
2,660,868	+				-0.7
2,660,868	+				-0.1
2,660,869	-				-0.5
2,660,869	-				+1.7
2,660,869	-				-0.2
2,660,869	-				+0.3
2,660,906	+				-0.2
2,660,906	+				-0.3
2,660,906	+				+0.8
2,660,907	-				+1.1
2,660,959	+				-0.4
2,660,959	+				-1.3
2,660,960	-				-0.8
2,661,001	+				+0.4
2,661,025	+				+1.1
2,661,025	+				+0.3
2,661,025	+				+0.3
2,661,026	-				+0.2
2,661,331	+		PP_2333	0.21	+0.5
2,661,332	-		PP_2333	0.21	-0.1
2,661,332	-		PP_2333	0.21	-0.6
2,661,426	-		PP_2333	0.34	-2.1
2,661,596	-		PP_2333	0.57	-1.0
2,661,613	+		PP_2333	0.60	-1.3
2,661,613	+		PP_2333	0.60	-0.6
2,661,614	-		PP_2333	0.60	-0.6
2,661,620	+		PP_2333	0.61	+0.2
2,661,703	+		PP_2333	0.72	-1.0
2,661,704	-		PP_2333	0.73	-0.4
2,661,708	+		PP_2333	0.73	+0.3
2,661,860	-				+0.1
2,662,026	+		PP_2334	0.14	-0.7
2,662,026	+		PP_2334	0.14	-0.5
2,662,027	-		PP_2334	0.15	-1.1
2,662,027	-		PP_2334	0.15	-0.8
2,662,027	-		PP_2334	0.15	-0.7
2,662,239	-		PP_2334	0.38	-1.1
2,662,319	+		PP_2334	0.47	-0.6
2,662,320	-		PP_2334	0.47	-1.1
2,662,485	+		PP_2334	0.66	-0.4
2,662,485	+		PP_2334	0.66	-0.8
2,662,486	-		PP_2334	0.66	-1.2
2,662,558	-		PP_2334	0.74	-1.3
2,662,650	+		PP_2334	0.85	-0.0
2,662,650	+		PP_2334	0.85	+0.4
2,662,651	-		PP_2334	0.85	-0.2
2,662,735	-				-0.4
2,662,864	+				-1.3