Strain Fitness in Pseudomonas putida KT2440 around PP_2248

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
2,562,974	-		PP_2246	0.63	-0.6
2,563,014	-		PP_2246	0.66	-0.9
2,563,115	-		PP_2246	0.75	-2.3
2,563,115	-		PP_2246	0.75	+0.6
2,563,118	+		PP_2246	0.75	-0.5
2,563,118	+		PP_2246	0.75	+0.7
2,563,119	-		PP_2246	0.75	+0.3
2,563,679	+		PP_2247	0.71	-1.9
2,563,679	+		PP_2247	0.71	-0.5
2,563,679	+		PP_2247	0.71	+0.2
2,563,680	-		PP_2247	0.71	-1.5
2,563,680	-		PP_2247	0.71	+0.3
2,563,680	-		PP_2247	0.71	-0.4
2,563,809	-				-0.9
2,564,370	+		PP_2248	0.44	+0.2
2,564,469	+		PP_2248	0.53	+0.3
2,564,469	+		PP_2248	0.53	-0.2
2,564,469	+		PP_2248	0.53	+0.2
2,564,469	+		PP_2248	0.53	+0.9
2,564,469	+		PP_2248	0.53	+1.1
2,564,470	-		PP_2248	0.53	+0.5
2,564,470	-		PP_2248	0.53	+0.4
2,564,470	-		PP_2248	0.53	+0.9
2,564,470	-		PP_2248	0.53	+1.2
2,564,470	-		PP_2248	0.53	-0.1
2,564,470	-		PP_2248	0.53	-0.4
2,564,478	+		PP_2248	0.54	+0.5
2,564,478	+		PP_2248	0.54	+0.7
2,564,479	-		PP_2248	0.54	+1.1
2,564,479	-		PP_2248	0.54	+0.1
2,564,480	+		PP_2248	0.54	+1.0
2,564,481	-		PP_2248	0.54	+0.6
2,564,481	-		PP_2248	0.54	+0.0
2,564,834	+		PP_2248	0.88	+0.7
2,564,887	-				+0.8
2,564,915	-				+1.0
2,564,964	+				-0.3
2,564,965	-				-0.9
2,564,965	-				+0.9
2,564,993	+				+0.4
2,565,317	-		PP_2249	0.15	+1.0
2,565,317	-		PP_2249	0.15	-0.3
2,565,317	-		PP_2249	0.15	+0.5
2,565,317	-		PP_2249	0.15	-0.1
2,565,317	-		PP_2249	0.15	-0.4
2,565,317	-		PP_2249	0.15	-0.4
2,565,871	+		PP_2249	0.44	-0.7
2,565,871	+		PP_2249	0.44	-0.9
2,565,872	-		PP_2249	0.44	+0.2
2,565,898	+		PP_2249	0.45	-1.7