Strain Fitness in Pseudomonas putida KT2440 around PP_2103

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
2,401,051	-		PP_2102	0.37	+0.9
2,401,108	-		PP_2102	0.41	+0.7
2,401,108	-		PP_2102	0.41	-0.2
2,401,108	-		PP_2102	0.41	+1.0
2,401,155	+		PP_2102	0.45	-0.4
2,401,156	-		PP_2102	0.45	-0.7
2,401,279	-		PP_2102	0.54	-0.1
2,401,347	+				+1.3
2,401,365	+		PP_2102	0.61	-0.2
2,401,365	+		PP_2102	0.61	+0.0
2,401,366	-		PP_2102	0.61	-0.0
2,401,366	-		PP_2102	0.61	-2.1
2,401,366	-		PP_2102	0.61	+0.9
2,401,398	+		PP_2102	0.63	+0.6
2,401,399	-		PP_2102	0.63	+1.3
2,401,399	-		PP_2102	0.63	+0.1
2,401,712	-		PP_2102	0.87	+0.4
2,401,712	-		PP_2102	0.87	+0.8
2,401,717	+		PP_2102	0.87	-1.4
2,401,839	+				+0.1
2,401,840	-				+0.3
2,401,923	-				+0.4
2,401,979	+				-0.4
2,401,980	-				-0.2
2,402,070	+		PP_2103	0.10	+0.6
2,402,100	+		PP_2103	0.19	+0.8
2,402,100	+		PP_2103	0.19	+0.4
2,402,128	-		PP_2103	0.28	-0.2
2,402,211	+		PP_2103	0.53	+0.4
2,402,211	+		PP_2103	0.53	+0.9
2,402,463	+		PP_2104	0.27	+1.0
2,402,464	-		PP_2104	0.27	-1.0
2,402,481	+		PP_2104	0.31	+0.9
2,402,481	+		PP_2104	0.31	-0.1
2,402,481	+		PP_2104	0.31	-1.0
2,402,481	+		PP_2104	0.31	+0.1
2,402,481	+		PP_2104	0.31	+0.2
2,402,482	-		PP_2104	0.32	+0.5
2,402,482	-		PP_2104	0.32	+0.6
2,402,482	-		PP_2104	0.32	+0.3
2,402,503	+		PP_2104	0.37	+0.3
2,402,504	-		PP_2104	0.38	+0.3
2,402,829	+		PP_2105	0.26	-0.8
2,402,829	+		PP_2105	0.26	+0.5
2,402,830	-		PP_2105	0.26	-0.3
2,403,026	+		PP_2105	0.89	+0.3
2,403,027	-		PP_2105	0.89	-0.3
2,403,027	-		PP_2105	0.89	+0.3
2,403,089	+				-0.6
2,403,089	+				+0.8
2,403,090	-				+0.4
2,403,294	+				+0.4