Strain Fitness in Pseudomonas putida KT2440 around PP_1922

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
2,167,918	+		PP_1921	0.84	-0.2
2,168,009	+				-0.9
2,168,138	+				+0.7
2,168,159	-				+0.2
2,168,186	+				-0.6
2,168,186	+				+0.5
2,168,240	+				+0.2
2,168,240	+				-0.6
2,168,240	+				-0.6
2,168,241	-				-0.6
2,168,241	-				+0.3
2,168,282	+				+0.4
2,168,282	+				-0.5
2,168,283	-				-0.4
2,168,283	-				-0.1
2,168,283	-				+0.1
2,168,283	-				+0.1
2,168,346	-				+0.2
2,168,422	+				-0.6
2,168,422	+				+0.1
2,168,423	-				-0.1
2,168,492	+				+0.2
2,168,492	+				-0.2
2,168,492	+				-0.3
2,168,493	-				-0.0
2,168,501	+				+0.8
2,168,501	+				+0.4
2,168,501	+				-0.2
2,168,502	-				+0.7
2,168,502	-				+0.9
2,168,502	-				-0.8
2,168,552	-				-1.5
2,168,669	+				+0.6
2,168,743	+				-0.2
2,168,992	+		PP_1922	0.24	-0.8
2,169,244	-		PP_1922	0.54	-0.5
2,169,250	+		PP_1922	0.54	+0.1
2,169,314	+		PP_1922	0.62	-1.6
2,169,315	-		PP_1922	0.62	-0.2
2,169,332	-		PP_1922	0.64	-0.0
2,169,361	+		PP_1922	0.67	-0.3
2,169,362	-		PP_1922	0.68	-1.4
2,169,608	-				+0.5
2,169,612	+				+0.3
2,169,614	+				+2.4
2,169,617	-				-0.1
2,169,725	+				+0.8
2,169,725	+				-1.6
2,169,725	+				+0.9
2,169,725	+				+0.5
2,169,726	-				-0.8
2,169,726	-				-0.4
2,169,726	-				+0.2
2,169,726	-				+0.3
2,169,742	-				-0.1
2,169,742	-				+0.3
2,169,857	+		PP_1923	0.15	-0.3
2,169,857	+		PP_1923	0.15	+1.1
2,169,857	+		PP_1923	0.15	-0.4
2,169,857	+		PP_1923	0.15	-0.5
2,169,858	-				+1.4
2,169,858	-		PP_1923	0.15	+0.7
2,169,858	-		PP_1923	0.15	+0.6
2,169,858	-		PP_1923	0.15	+0.3
2,169,858	-		PP_1923	0.15	-0.7
2,169,858	-		PP_1923	0.15	+0.1
2,169,858	-		PP_1923	0.15	+0.1
2,169,858	-		PP_1923	0.15	-0.8
2,169,858	-		PP_1923	0.15	+0.4
2,169,862	+		PP_1923	0.15	+0.3
2,169,862	+		PP_1923	0.15	-0.4
2,169,862	+		PP_1923	0.15	+1.0
2,169,863	-		PP_1923	0.16	+0.1
2,169,863	-		PP_1923	0.16	-0.3
2,169,863	-		PP_1923	0.16	+0.8
2,169,863	-		PP_1923	0.16	-0.3
2,169,863	-		PP_1923	0.16	-1.7
2,169,863	-		PP_1923	0.16	-1.1
2,169,863	-		PP_1923	0.16	+0.6
2,169,863	-		PP_1923	0.16	+0.7
2,169,864	+		PP_1923	0.16	-0.9
2,169,864	+		PP_1923	0.16	+0.1
2,169,865	-		PP_1923	0.16	-1.3
2,169,865	-		PP_1923	0.16	-1.0
2,169,865	-		PP_1923	0.16	-2.3
2,169,865	-		PP_1923	0.16	-1.1
2,169,865	-		PP_1923	0.16	-0.8
2,169,865	-		PP_1923	0.16	-1.0
2,169,865	-		PP_1923	0.16	-0.1
2,169,865	-		PP_1923	0.16	+0.0
2,169,866	+		PP_1923	0.16	+0.3
2,169,866	+		PP_1923	0.16	-0.5
2,169,866	+		PP_1923	0.16	-0.2
2,169,867	-		PP_1923	0.16	+0.8
2,169,867	-		PP_1923	0.16	+1.4
2,169,867	-		PP_1923	0.16	+0.4
2,169,867	-		PP_1923	0.16	+0.4
2,169,867	-		PP_1923	0.16	+0.0
2,169,867	-		PP_1923	0.16	+0.6
2,169,867	-		PP_1923	0.16	-0.5
2,169,867	-		PP_1923	0.16	-0.2
2,169,897	-		PP_1923	0.20	-1.6
2,169,921	+		PP_1923	0.23	-0.5
2,169,922	-		PP_1923	0.23	-0.4
2,169,922	-				+0.4
2,169,928	-		PP_1923	0.24	+0.4
2,169,998	+		PP_1923	0.33	-0.9
2,169,998	+		PP_1923	0.33	-0.6
2,170,032	-		PP_1923	0.37	-2.7
2,170,050	+		PP_1923	0.39	+0.5
2,170,050	+		PP_1923	0.39	-0.1
2,170,051	-		PP_1923	0.39	-0.4
2,170,051	-		PP_1923	0.39	+0.1
2,170,054	+		PP_1923	0.40	+0.0
2,170,054	+		PP_1923	0.40	-0.5
2,170,054	+		PP_1923	0.40	-0.2
2,170,054	+		PP_1923	0.40	+0.1
2,170,055	-		PP_1923	0.40	-0.7
2,170,055	-		PP_1923	0.40	+0.8
2,170,055	-		PP_1923	0.40	-0.1
2,170,143	+		PP_1923	0.51	+0.1
2,170,144	-		PP_1923	0.51	-0.6
2,170,144	-		PP_1923	0.51	-0.8
2,170,286	+		PP_1923	0.69	-0.0
2,170,286	+		PP_1923	0.69	+1.0
2,170,286	+		PP_1923	0.69	+0.0
2,170,287	-		PP_1923	0.69	-0.4
2,170,387	+		PP_1923	0.82	+0.1
2,170,387	+		PP_1923	0.82	-0.4
2,170,387	+		PP_1923	0.82	-0.4
2,170,387	+		PP_1923	0.82	+0.7
2,170,387	+		PP_1923	0.82	+0.4
2,170,388	-		PP_1923	0.82	+0.2
2,170,388	-				-1.5
2,170,388	-		PP_1923	0.82	+0.6
2,170,391	+		PP_1923	0.83	-0.4
2,170,391	+		PP_1923	0.83	+0.1
2,170,391	+		PP_1923	0.83	-0.0
2,170,392	-		PP_1923	0.83	-0.1
2,170,412	-		PP_1923	0.85	-0.3
2,170,452	-				+1.1
2,170,468	+				-0.5
2,170,468	+				+0.3
2,170,468	+				-0.6
2,170,469	-				+0.8
2,170,549	+				-0.4
2,170,549	+				-0.1
2,170,550	-				-0.7
2,170,581	+				+0.2
2,170,581	+				+0.4
2,170,582	-				+0.3
2,170,607	+				-0.5
2,170,607	+				+0.3
2,170,608	-				+0.0
2,170,621	+				-0.0
2,170,621	+				-0.1
2,170,621	+				-0.3
2,170,621	+				-0.5
2,170,621	+				-0.1
2,170,622	-				+0.5
2,170,622	-				-0.4
2,170,622	-				-0.9
2,170,622	-				-0.3