Strain Fitness in Pseudomonas putida KT2440 around PP_1225

Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (commercial) 0.25 vol%
1,400,018	+				-0.5
1,400,018	+				-1.2
1,400,018	+				+0.9
1,400,022	+				+0.1
1,400,022	+				+0.2
1,400,022	+				-0.0
1,400,030	+				-0.3
1,400,036	+				+0.6
1,400,036	+				+1.6
1,400,036	+				-1.4
1,400,036	+				+1.2
1,400,036	+				-0.7
1,400,481	+		PP_1224	0.56	+1.6
1,400,481	+		PP_1224	0.56	+0.9
1,400,481	+		PP_1224	0.56	+0.2
1,400,482	-		PP_1224	0.56	-0.8
1,400,484	+		PP_1224	0.56	-0.4
1,400,484	+		PP_1224	0.56	-0.9
1,400,485	-		PP_1224	0.56	+0.2
1,400,563	-		PP_1224	0.66	+0.4
1,400,563	-		PP_1224	0.66	-2.2
1,400,577	+		PP_1224	0.68	+0.6
1,400,707	-		PP_1224	0.84	+0.2
1,400,732	+		PP_1224	0.87	+0.8
1,400,752	+		PP_1224	0.89	-0.5
1,400,752	+		PP_1224	0.89	-0.3
1,400,752	+				+1.6
1,400,752	+		PP_1224	0.89	-0.6
1,400,752	+		PP_1224	0.89	+0.6
1,400,753	-		PP_1224	0.89	-0.2
1,400,835	+				-0.7
1,400,938	+				+1.3
1,400,938	+				-0.8
1,400,939	-				+0.4
1,400,939	-				-0.8
1,400,983	+				-1.0
1,400,983	+				+1.0
1,400,983	+				-0.9
1,400,984	-				+1.1
1,400,984	-				+1.6
1,400,984	-				-0.3
1,401,019	+				+1.1
1,401,019	+				-0.7
1,401,019	+				-0.1
1,401,020	-				+0.6
1,401,020	-				+0.3
1,401,082	+		PP_1225	0.12	+0.4
1,401,082	+		PP_1225	0.12	+1.7
1,401,082	+		PP_1225	0.12	+1.2
1,401,083	-		PP_1225	0.12	+0.2
1,401,083	-		PP_1225	0.12	+0.7
1,401,135	+		PP_1225	0.20	+0.2
1,401,157	+		PP_1225	0.23	+0.7
1,401,320	+		PP_1225	0.48	-0.0
1,401,320	+		PP_1225	0.48	-0.0
1,401,321	-		PP_1225	0.49	-1.0
1,401,495	+		PP_1225	0.75	-0.2
1,401,496	-		PP_1225	0.76	+0.9
1,401,496	-		PP_1225	0.76	-1.5
1,401,598	+				-0.8
1,401,599	-				-2.1
1,401,666	+				-0.4
1,401,666	+				+0.7
1,401,666	+				-0.6
1,401,666	+				-1.2
1,401,666	+				-0.6
1,401,667	-				-0.0
1,401,667	-				-1.4
1,401,690	+				-0.6
1,401,691	-				+0.3
1,401,691	-				-0.5
1,401,761	+		PP_1226	0.13	+1.2
1,401,950	+		PP_1226	0.41	-0.9
1,401,950	+		PP_1226	0.41	+0.3
1,401,950	+		PP_1226	0.41	-1.1
1,401,950	+		PP_1226	0.41	-0.2
1,401,951	-		PP_1226	0.41	-0.6
1,401,951	-		PP_1226	0.41	+1.2
1,402,005	+		PP_1226	0.49	-0.1
1,402,050	-		PP_1226	0.56	-1.3
1,402,128	+		PP_1226	0.68	-0.0
1,402,128	+		PP_1226	0.68	-0.6
1,402,129	-		PP_1226	0.68	-0.4
1,402,129	-		PP_1226	0.68	+1.6
1,402,217	+		PP_1226	0.81	+0.1
1,402,238	+		PP_1226	0.84	+0.1
1,402,338	-				+0.4
1,402,414	-		PP_t13	0.11	-0.6
1,402,426	-		PP_t13	0.26	+0.3
1,402,442	-		PP_t13	0.47	+0.7
1,402,468	+		PP_t13	0.82	+1.6
1,402,489	+				-1.1
1,402,490	-				+0.6
1,402,576	+				-0.7