Experiment: 3-methyl-3-butenol (commercial) 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0559 and PP_0560 are separated by 99 nucleotides PP_0560 and PP_0561 are separated by 179 nucleotides PP_0561 and PP_0562 are separated by 117 nucleotides
PP_0559: PP_0559 - acetyl-CoA carboxylase - biotin carboxyl carrier subunit, at 649,695 to 650,156
_0559
PP_0560: PP_0560 - 3-dehydroquinate dehydratase 1, type II, at 650,256 to 650,711
_0560
PP_0561: PP_0561 - thiol/disulfide interchange protein 1, at 650,891 to 652,663
_0561
PP_0562: PP_0562 - Methyl-accepting chemotaxis protein CtpL, at 652,781 to 654,742
_0562
Position (kb) 650
651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 650.767 kb on - strand at 650.831 kb on - strand at 650.831 kb on - strand at 650.846 kb on + strand at 650.893 kb on - strand at 650.894 kb on + strand at 650.894 kb on + strand at 650.948 kb on + strand at 651.174 kb on + strand, within PP_0561 at 651.263 kb on - strand, within PP_0561 at 651.354 kb on + strand, within PP_0561 at 651.509 kb on + strand, within PP_0561 at 651.548 kb on + strand, within PP_0561 at 651.549 kb on - strand, within PP_0561 at 651.703 kb on + strand, within PP_0561 at 651.704 kb on - strand, within PP_0561 at 651.704 kb on - strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.734 kb on + strand, within PP_0561 at 651.911 kb on + strand, within PP_0561 at 651.932 kb on + strand, within PP_0561 at 652.017 kb on + strand, within PP_0561 at 652.017 kb on + strand, within PP_0561 at 652.214 kb on - strand, within PP_0561 at 652.214 kb on - strand at 652.214 kb on - strand, within PP_0561 at 652.303 kb on + strand, within PP_0561 at 652.303 kb on + strand, within PP_0561 at 652.304 kb on - strand, within PP_0561 at 652.335 kb on + strand, within PP_0561 at 652.335 kb on + strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.408 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.455 kb on + strand at 652.455 kb on + strand, within PP_0561 at 652.455 kb on + strand, within PP_0561 at 652.455 kb on + strand, within PP_0561 at 652.533 kb on - strand at 652.634 kb on + strand at 652.716 kb on - strand at 652.716 kb on - strand at 652.735 kb on + strand at 652.736 kb on - strand at 652.736 kb on - strand at 652.736 kb on - strand at 652.747 kb on + strand at 652.850 kb on - strand at 653.286 kb on - strand, within PP_0562 at 653.602 kb on + strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.634 kb on + strand, within PP_0562
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-3-butenol (commercial) 0.25 vol% remove 650,767 - -0.1 650,831 - +0.8 650,831 - -0.1 650,846 + -0.2 650,893 - -0.1 650,894 + +0.5 650,894 + -2.3 650,948 + +0.2 651,174 + PP_0561 0.16 +0.5 651,263 - PP_0561 0.21 -1.2 651,354 + PP_0561 0.26 +0.2 651,509 + PP_0561 0.35 -0.1 651,548 + PP_0561 0.37 +0.4 651,549 - PP_0561 0.37 +0.3 651,703 + PP_0561 0.46 -0.2 651,704 - PP_0561 0.46 -0.4 651,704 - PP_0561 0.46 -0.1 651,705 + PP_0561 0.46 -0.3 651,705 + PP_0561 0.46 +1.1 651,705 + PP_0561 0.46 -0.6 651,705 + PP_0561 0.46 +0.3 651,706 - PP_0561 0.46 +0.3 651,706 - PP_0561 0.46 +0.5 651,706 - PP_0561 0.46 +0.9 651,706 - PP_0561 0.46 -0.1 651,706 - PP_0561 0.46 +0.3 651,706 - PP_0561 0.46 -0.5 651,706 - PP_0561 0.46 +0.3 651,734 + PP_0561 0.48 +0.3 651,911 + PP_0561 0.58 -1.6 651,932 + PP_0561 0.59 +0.2 652,017 + PP_0561 0.64 +0.3 652,017 + PP_0561 0.64 +0.3 652,214 - PP_0561 0.75 -0.1 652,214 - +2.2 652,214 - PP_0561 0.75 +0.1 652,303 + PP_0561 0.80 +0.7 652,303 + PP_0561 0.80 -0.5 652,304 - PP_0561 0.80 +0.0 652,335 + PP_0561 0.81 -0.3 652,335 + PP_0561 0.81 -0.3 652,336 - PP_0561 0.82 +0.2 652,336 - PP_0561 0.82 -0.8 652,336 - PP_0561 0.82 -0.3 652,408 + PP_0561 0.86 +1.5 652,452 + PP_0561 0.88 -0.2 652,452 + PP_0561 0.88 +1.5 652,452 + PP_0561 0.88 +0.9 652,452 + PP_0561 0.88 -0.4 652,452 + PP_0561 0.88 +0.3 652,455 + +1.9 652,455 + PP_0561 0.88 -0.6 652,455 + PP_0561 0.88 -1.1 652,455 + PP_0561 0.88 +0.9 652,533 - +0.3 652,634 + +0.4 652,716 - +0.0 652,716 - -0.2 652,735 + +1.0 652,736 - +0.0 652,736 - +0.5 652,736 - -0.3 652,747 + +0.3 652,850 - -0.7 653,286 - PP_0562 0.26 +0.4 653,602 + PP_0562 0.42 -0.1 653,603 - PP_0562 0.42 -0.2 653,603 - PP_0562 0.42 +0.1 653,603 - PP_0562 0.42 +0.4 653,634 + PP_0562 0.43 -1.1
Or see this region's nucleotide sequence