Strain Fitness in Escherichia coli BW25113 around b1900
Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
1,980,827 | - | +0.9 | |||
1,980,984 | + | araH | b4460 | 0.41 | -0.0 |
1,981,002 | - | araH | b4460 | 0.43 | -0.2 |
1,981,002 | - | araH | b4460 | 0.43 | +1.5 |
1,981,480 | + | -0.3 | |||
1,981,487 | + | +1.2 | |||
1,981,505 | - | -0.7 | |||
1,981,531 | - | +0.3 | |||
1,981,800 | + | araG | b1900 | 0.15 | +0.0 |
1,982,173 | - | araG | b1900 | 0.39 | +1.2 |
1,982,173 | - | araG | b1900 | 0.39 | +2.1 |
1,982,180 | + | araG | b1900 | 0.40 | +1.3 |
1,982,406 | + | araG | b1900 | 0.55 | +0.7 |
1,982,612 | + | araG | b1900 | 0.68 | +1.6 |
1,982,644 | + | araG | b1900 | 0.70 | -1.1 |
1,982,644 | + | araG | b1900 | 0.70 | +2.4 |
1,982,767 | - | araG | b1900 | 0.78 | +0.3 |
1,982,862 | - | araG | b1900 | 0.85 | +0.1 |
1,982,959 | - | -2.1 | |||
1,982,959 | - | -0.9 | |||
1,982,984 | + | +1.4 | |||
1,983,030 | + | -1.2 | |||
1,983,103 | - | -0.5 | |||
1,983,103 | - | -1.4 | |||
1,983,228 | + | +0.7 | |||
1,983,386 | - | araF | b1901 | 0.23 | +1.9 |
1,983,459 | - | araF | b1901 | 0.30 | +1.2 |
1,983,471 | - | araF | b1901 | 0.31 | -0.4 |
1,983,528 | - | araF | b1901 | 0.37 | -0.2 |
1,983,528 | - | araF | b1901 | 0.37 | -0.0 |
1,983,690 | - | araF | b1901 | 0.53 | +0.6 |
1,983,690 | - | araF | b1901 | 0.53 | +0.5 |
1,983,692 | + | araF | b1901 | 0.53 | -0.7 |
1,983,713 | + | araF | b1901 | 0.56 | -1.2 |
1,983,738 | - | araF | b1901 | 0.58 | +1.6 |
1,983,943 | + | araF | b1901 | 0.79 | +0.4 |
Or see this region's nucleotide sequence