Strain Fitness in Escherichia coli BW25113 around b0877
Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
916,374 | - | ybjD | b0876 | 0.41 | +1.4 |
916,463 | + | ybjD | b0876 | 0.46 | +0.9 |
916,463 | + | ybjD | b0876 | 0.46 | +0.7 |
916,540 | - | ybjD | b0876 | 0.51 | +0.1 |
916,546 | + | ybjD | b0876 | 0.51 | +0.3 |
916,717 | - | ybjD | b0876 | 0.62 | +2.1 |
916,717 | - | ybjD | b0876 | 0.62 | -2.0 |
916,823 | + | ybjD | b0876 | 0.68 | +1.5 |
916,823 | + | ybjD | b0876 | 0.68 | -0.7 |
916,869 | + | ybjD | b0876 | 0.71 | -2.0 |
916,869 | + | ybjD | b0876 | 0.71 | -0.7 |
916,989 | + | ybjD | b0876 | 0.78 | +0.8 |
917,422 | - | +0.8 | |||
917,467 | + | ybjX | b0877 | 0.12 | +0.3 |
917,467 | + | ybjX | b0877 | 0.12 | +1.0 |
917,528 | + | ybjX | b0877 | 0.18 | +1.1 |
917,528 | + | ybjX | b0877 | 0.18 | +0.1 |
917,643 | - | ybjX | b0877 | 0.29 | +0.9 |
917,658 | - | ybjX | b0877 | 0.31 | +1.1 |
917,658 | - | ybjX | b0877 | 0.31 | -0.0 |
917,775 | + | ybjX | b0877 | 0.43 | +1.0 |
917,828 | + | ybjX | b0877 | 0.48 | -0.7 |
917,838 | + | ybjX | b0877 | 0.49 | -0.7 |
917,878 | + | ybjX | b0877 | 0.53 | +1.5 |
917,878 | + | ybjX | b0877 | 0.53 | +0.7 |
917,891 | - | ybjX | b0877 | 0.54 | -0.3 |
917,948 | - | ybjX | b0877 | 0.60 | +0.6 |
918,050 | - | ybjX | b0877 | 0.70 | -0.2 |
918,059 | + | ybjX | b0877 | 0.71 | -2.1 |
918,271 | + | +1.2 | |||
918,484 | + | -0.5 | |||
918,620 | + | b0878 | b0878 | 0.15 | +0.9 |
918,789 | - | b0878 | b0878 | 0.30 | +1.7 |
918,849 | - | +0.3 | |||
918,849 | - | b0878 | b0878 | 0.35 | +1.0 |
918,985 | + | b0878 | b0878 | 0.47 | +0.4 |
919,227 | - | b0878 | b0878 | 0.69 | -0.1 |
919,262 | + | b0878 | b0878 | 0.72 | +0.2 |
919,262 | + | b0878 | b0878 | 0.72 | +0.5 |
919,298 | - | b0878 | b0878 | 0.75 | -0.2 |
919,298 | - | b0878 | b0878 | 0.75 | -0.3 |
919,343 | + | b0878 | b0878 | 0.79 | +0.3 |
Or see this region's nucleotide sequence