Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4506 and Psyr_4507 overlap by 4 nucleotides Psyr_4507 and Psyr_4508 overlap by 1 nucleotides Psyr_4508 and Psyr_4509 are separated by 509 nucleotides
Psyr_4506: Psyr_4506 - Glycerophosphodiester phosphodiesterase, at 5,370,347 to 5,371,108
_4506
Psyr_4507: Psyr_4507 - Inositol monophosphatase, at 5,371,105 to 5,371,848
_4507
Psyr_4508: Psyr_4508 - Endo-1,4-beta-xylanase, at 5,371,848 to 5,372,960
_4508
Psyr_4509: Psyr_4509 - hypothetical protein, at 5,373,470 to 5,374,126
_4509
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5370.856 kb on + strand, within Psyr_4506 at 5370.905 kb on + strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.937 kb on + strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5371.033 kb on - strand at 5371.033 kb on - strand at 5371.033 kb on - strand at 5371.139 kb on + strand at 5371.140 kb on - strand at 5371.140 kb on - strand at 5371.140 kb on - strand at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.462 kb on + strand, within Psyr_4507 at 5371.465 kb on - strand, within Psyr_4507 at 5371.694 kb on - strand, within Psyr_4507 at 5371.812 kb on - strand at 5371.860 kb on - strand at 5371.860 kb on - strand at 5371.981 kb on + strand, within Psyr_4508 at 5372.066 kb on - strand, within Psyr_4508 at 5372.119 kb on - strand, within Psyr_4508 at 5372.174 kb on + strand, within Psyr_4508 at 5372.174 kb on + strand, within Psyr_4508 at 5372.175 kb on - strand, within Psyr_4508 at 5372.175 kb on - strand, within Psyr_4508 at 5372.382 kb on + strand, within Psyr_4508 at 5372.383 kb on - strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.461 kb on - strand, within Psyr_4508 at 5372.628 kb on - strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.741 kb on + strand, within Psyr_4508 at 5372.742 kb on - strand, within Psyr_4508 at 5372.742 kb on - strand, within Psyr_4508 at 5372.742 kb on - strand, within Psyr_4508 at 5372.742 kb on - strand, within Psyr_4508 at 5372.748 kb on + strand, within Psyr_4508 at 5372.783 kb on + strand, within Psyr_4508 at 5372.789 kb on + strand, within Psyr_4508 at 5372.790 kb on - strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.793 kb on - strand, within Psyr_4508 at 5372.793 kb on - strand, within Psyr_4508 at 5372.958 kb on + strand at 5372.959 kb on - strand at 5372.987 kb on + strand at 5372.987 kb on + strand at 5372.987 kb on + strand at 5372.987 kb on + strand at 5372.988 kb on - strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.084 kb on - strand at 5373.090 kb on + strand at 5373.090 kb on + strand at 5373.090 kb on + strand at 5373.091 kb on - strand at 5373.091 kb on - strand at 5373.118 kb on - strand at 5373.132 kb on + strand at 5373.133 kb on - strand at 5373.135 kb on - strand at 5373.224 kb on + strand at 5373.224 kb on + strand at 5373.224 kb on + strand at 5373.225 kb on - strand at 5373.231 kb on - strand at 5373.249 kb on - strand at 5373.316 kb on - strand at 5373.361 kb on + strand at 5373.362 kb on - strand at 5373.368 kb on + strand at 5373.454 kb on + strand at 5373.455 kb on - strand at 5373.455 kb on - strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.480 kb on - strand at 5373.493 kb on + strand at 5373.493 kb on + strand at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.621 kb on + strand, within Psyr_4509 at 5373.621 kb on + strand, within Psyr_4509 at 5373.652 kb on + strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.658 kb on - strand, within Psyr_4509 at 5373.658 kb on - strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.743 kb on + strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.792 kb on + strand, within Psyr_4509 at 5373.797 kb on + strand, within Psyr_4509 at 5373.839 kb on + strand, within Psyr_4509 at 5373.839 kb on + strand, within Psyr_4509 at 5373.840 kb on - strand, within Psyr_4509 at 5373.840 kb on - strand, within Psyr_4509 at 5373.848 kb on + strand, within Psyr_4509 at 5373.849 kb on - strand, within Psyr_4509 at 5373.872 kb on - strand, within Psyr_4509 at 5373.887 kb on + strand, within Psyr_4509 at 5373.888 kb on - strand, within Psyr_4509
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 5,370,856 + Psyr_4506 0.67 +0.9 5,370,905 + Psyr_4506 0.73 +0.6 5,370,918 + Psyr_4506 0.75 +0.7 5,370,919 - Psyr_4506 0.75 +0.2 5,370,919 - Psyr_4506 0.75 +3.2 5,370,919 - Psyr_4506 0.75 +0.7 5,370,927 + Psyr_4506 0.76 -0.1 5,370,927 + Psyr_4506 0.76 +0.9 5,370,927 + Psyr_4506 0.76 -0.4 5,370,928 - Psyr_4506 0.76 +0.0 5,370,928 - Psyr_4506 0.76 +0.3 5,370,928 - Psyr_4506 0.76 -0.4 5,370,937 + Psyr_4506 0.77 -0.0 5,370,938 - Psyr_4506 0.78 +0.3 5,370,938 - Psyr_4506 0.78 +0.0 5,371,033 - +0.7 5,371,033 - +0.6 5,371,033 - -0.1 5,371,139 + -0.1 5,371,140 - +0.6 5,371,140 - +1.8 5,371,140 - -0.2 5,371,291 - Psyr_4507 0.25 +1.3 5,371,291 - Psyr_4507 0.25 -0.1 5,371,291 - Psyr_4507 0.25 +2.8 5,371,291 - Psyr_4507 0.25 -0.1 5,371,370 - Psyr_4507 0.36 +1.3 5,371,408 + Psyr_4507 0.41 -0.9 5,371,408 + Psyr_4507 0.41 -0.4 5,371,408 + Psyr_4507 0.41 -0.3 5,371,408 + Psyr_4507 0.41 +0.4 5,371,408 + Psyr_4507 0.41 +0.6 5,371,408 + Psyr_4507 0.41 -0.9 5,371,409 - Psyr_4507 0.41 +0.7 5,371,409 - Psyr_4507 0.41 +0.6 5,371,409 - Psyr_4507 0.41 -1.0 5,371,409 - Psyr_4507 0.41 -0.0 5,371,409 - Psyr_4507 0.41 -0.2 5,371,409 - Psyr_4507 0.41 +0.4 5,371,409 - Psyr_4507 0.41 +0.9 5,371,409 - Psyr_4507 0.41 +0.2 5,371,409 - Psyr_4507 0.41 -0.5 5,371,409 - Psyr_4507 0.41 +0.4 5,371,409 - Psyr_4507 0.41 +3.0 5,371,462 + Psyr_4507 0.48 +0.9 5,371,465 - Psyr_4507 0.48 +0.1 5,371,694 - Psyr_4507 0.79 +0.5 5,371,812 - +0.2 5,371,860 - -0.0 5,371,860 - -0.4 5,371,981 + Psyr_4508 0.12 +0.1 5,372,066 - Psyr_4508 0.20 -0.5 5,372,119 - Psyr_4508 0.24 +0.8 5,372,174 + Psyr_4508 0.29 +0.8 5,372,174 + Psyr_4508 0.29 +0.9 5,372,175 - Psyr_4508 0.29 +0.4 5,372,175 - Psyr_4508 0.29 +0.3 5,372,382 + Psyr_4508 0.48 +1.5 5,372,383 - Psyr_4508 0.48 +2.9 5,372,413 + Psyr_4508 0.51 +0.4 5,372,413 + Psyr_4508 0.51 +0.7 5,372,413 + Psyr_4508 0.51 -1.1 5,372,413 + Psyr_4508 0.51 -1.4 5,372,413 + Psyr_4508 0.51 -1.7 5,372,413 + Psyr_4508 0.51 -1.0 5,372,413 + Psyr_4508 0.51 -0.1 5,372,414 - Psyr_4508 0.51 -0.3 5,372,414 - Psyr_4508 0.51 +0.5 5,372,414 - Psyr_4508 0.51 +0.7 5,372,460 + Psyr_4508 0.55 +0.9 5,372,460 + Psyr_4508 0.55 -1.6 5,372,461 - Psyr_4508 0.55 +0.0 5,372,628 - Psyr_4508 0.70 +1.0 5,372,739 + Psyr_4508 0.80 -0.1 5,372,739 + Psyr_4508 0.80 -0.6 5,372,739 + Psyr_4508 0.80 +1.4 5,372,739 + Psyr_4508 0.80 +0.4 5,372,739 + Psyr_4508 0.80 +0.4 5,372,739 + Psyr_4508 0.80 -0.4 5,372,739 + Psyr_4508 0.80 -0.1 5,372,739 + Psyr_4508 0.80 -0.6 5,372,740 - Psyr_4508 0.80 +0.7 5,372,740 - Psyr_4508 0.80 -1.8 5,372,740 - Psyr_4508 0.80 -0.0 5,372,740 - Psyr_4508 0.80 -1.1 5,372,741 + Psyr_4508 0.80 -1.7 5,372,742 - Psyr_4508 0.80 +0.2 5,372,742 - Psyr_4508 0.80 -2.4 5,372,742 - Psyr_4508 0.80 +0.6 5,372,742 - Psyr_4508 0.80 +0.9 5,372,748 + Psyr_4508 0.81 +1.2 5,372,783 + Psyr_4508 0.84 +0.2 5,372,789 + Psyr_4508 0.85 +0.6 5,372,790 - Psyr_4508 0.85 +0.9 5,372,792 + Psyr_4508 0.85 -0.1 5,372,792 + Psyr_4508 0.85 +2.3 5,372,792 + Psyr_4508 0.85 -0.5 5,372,792 + Psyr_4508 0.85 +0.6 5,372,792 + Psyr_4508 0.85 +0.1 5,372,793 - Psyr_4508 0.85 -0.7 5,372,793 - Psyr_4508 0.85 -0.4 5,372,958 + -0.0 5,372,959 - -0.8 5,372,987 + -1.9 5,372,987 + -0.6 5,372,987 + -0.9 5,372,987 + +1.4 5,372,988 - +1.0 5,373,083 + +0.4 5,373,083 + -0.4 5,373,083 + -0.6 5,373,083 + -1.5 5,373,083 + +0.1 5,373,083 + +0.5 5,373,083 + +0.6 5,373,083 + +0.9 5,373,083 + +0.0 5,373,083 + -1.0 5,373,084 - -0.3 5,373,090 + +0.4 5,373,090 + +0.4 5,373,090 + +0.0 5,373,091 - -0.8 5,373,091 - +0.9 5,373,118 - +1.9 5,373,132 + -0.3 5,373,133 - +0.2 5,373,135 - +0.4 5,373,224 + +0.6 5,373,224 + +0.1 5,373,224 + +0.6 5,373,225 - -1.3 5,373,231 - +0.9 5,373,249 - +0.2 5,373,316 - +1.6 5,373,361 + -0.4 5,373,362 - +0.2 5,373,368 + -0.9 5,373,454 + +0.2 5,373,455 - +0.8 5,373,455 - -0.7 5,373,479 + +0.1 5,373,479 + +1.3 5,373,479 + +1.1 5,373,479 + +1.8 5,373,479 + -0.5 5,373,480 - +0.7 5,373,493 + +1.1 5,373,493 + +0.6 5,373,560 + Psyr_4509 0.14 +0.9 5,373,560 + Psyr_4509 0.14 -0.1 5,373,561 - Psyr_4509 0.14 +1.0 5,373,561 - Psyr_4509 0.14 +1.2 5,373,561 - Psyr_4509 0.14 +0.6 5,373,561 - Psyr_4509 0.14 +1.8 5,373,561 - Psyr_4509 0.14 -0.3 5,373,561 - Psyr_4509 0.14 +0.1 5,373,561 - Psyr_4509 0.14 +0.1 5,373,621 + Psyr_4509 0.23 -0.1 5,373,621 + Psyr_4509 0.23 +0.5 5,373,652 + Psyr_4509 0.28 +0.1 5,373,657 + Psyr_4509 0.28 +1.0 5,373,658 - Psyr_4509 0.29 +0.7 5,373,658 - Psyr_4509 0.29 +0.7 5,373,680 + Psyr_4509 0.32 -0.2 5,373,680 + Psyr_4509 0.32 +0.2 5,373,680 + Psyr_4509 0.32 -0.1 5,373,743 + Psyr_4509 0.42 -0.5 5,373,744 - Psyr_4509 0.42 -0.5 5,373,744 - Psyr_4509 0.42 -1.7 5,373,744 - Psyr_4509 0.42 +1.0 5,373,745 + Psyr_4509 0.42 +1.5 5,373,745 + Psyr_4509 0.42 +0.5 5,373,745 + Psyr_4509 0.42 +0.6 5,373,792 + Psyr_4509 0.49 +0.1 5,373,797 + Psyr_4509 0.50 -0.6 5,373,839 + Psyr_4509 0.56 +0.3 5,373,839 + Psyr_4509 0.56 +1.2 5,373,840 - Psyr_4509 0.56 -1.0 5,373,840 - Psyr_4509 0.56 +0.3 5,373,848 + Psyr_4509 0.58 -0.8 5,373,849 - Psyr_4509 0.58 -0.1 5,373,872 - Psyr_4509 0.61 -0.4 5,373,887 + Psyr_4509 0.63 -0.4 5,373,888 - Psyr_4509 0.64 -0.4
Or see this region's nucleotide sequence