Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4291 and Psyr_4292 are separated by 877 nucleotides Psyr_4292 and Psyr_4293 overlap by 4 nucleotides
Psyr_4291: Psyr_4291 - hypothetical protein, at 5,117,796 to 5,118,161
_4291
Psyr_4292: Psyr_4292 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 5,119,039 to 5,119,629
_4292
Psyr_4293: Psyr_4293 - Acyl-CoA thioesterase, at 5,119,626 to 5,120,495
_4293
Position (kb) 5119
5120 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.773 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.784 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.276 kb on + strand, within Psyr_4292 at 5119.276 kb on + strand, within Psyr_4292 at 5119.276 kb on + strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.327 kb on - strand, within Psyr_4292 at 5119.327 kb on - strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.357 kb on + strand, within Psyr_4292 at 5119.358 kb on - strand, within Psyr_4292 at 5119.358 kb on - strand, within Psyr_4292 at 5119.612 kb on + strand at 5119.613 kb on - strand at 5119.613 kb on - strand at 5119.614 kb on + strand at 5119.614 kb on + strand at 5119.615 kb on - strand at 5119.615 kb on - strand at 5119.615 kb on - strand at 5119.641 kb on - strand at 5119.704 kb on - strand at 5119.756 kb on + strand, within Psyr_4293 at 5119.756 kb on + strand, within Psyr_4293 at 5119.894 kb on + strand, within Psyr_4293 at 5119.895 kb on - strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5120.269 kb on + strand, within Psyr_4293 at 5120.270 kb on - strand, within Psyr_4293 at 5120.420 kb on + strand at 5120.510 kb on + strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.530 kb on - strand at 5120.530 kb on - strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.602 kb on - strand at 5120.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 5,118,111 + Psyr_4291 0.86 -0.4 5,118,111 + Psyr_4291 0.86 +0.1 5,118,111 + Psyr_4291 0.86 +0.5 5,118,111 + Psyr_4291 0.86 -0.2 5,118,111 + Psyr_4291 0.86 -0.9 5,118,769 + -0.4 5,118,769 + -1.4 5,118,769 + +0.8 5,118,769 + +0.4 5,118,769 + +0.0 5,118,769 + +0.9 5,118,769 + +1.2 5,118,770 - +0.1 5,118,770 - +0.5 5,118,770 - +0.5 5,118,770 - +1.0 5,118,770 - -0.4 5,118,770 - +0.1 5,118,770 - +0.1 5,118,771 + -2.4 5,118,771 + +0.7 5,118,771 + -0.5 5,118,771 + -1.4 5,118,771 + +1.7 5,118,771 + +0.1 5,118,771 + -1.9 5,118,772 - -0.6 5,118,772 - +0.7 5,118,773 + -0.5 5,118,783 + -0.6 5,118,783 + +0.8 5,118,784 - -1.6 5,118,834 - -1.2 5,118,834 - -2.5 5,118,834 - +1.8 5,118,834 - +0.1 5,118,946 + +0.1 5,118,946 + +0.2 5,118,946 + -0.1 5,118,948 + -1.2 5,118,948 + -0.1 5,118,948 + +0.1 5,118,950 + -0.1 5,118,950 + -0.7 5,118,950 + -0.4 5,118,950 + -0.6 5,118,960 + -0.1 5,118,960 + +0.0 5,118,960 + -1.6 5,119,172 + Psyr_4292 0.23 -0.2 5,119,172 + Psyr_4292 0.23 +0.6 5,119,172 + Psyr_4292 0.23 -0.9 5,119,173 - Psyr_4292 0.23 +0.2 5,119,173 - Psyr_4292 0.23 +0.1 5,119,173 - Psyr_4292 0.23 +0.0 5,119,276 + Psyr_4292 0.40 -0.3 5,119,276 + Psyr_4292 0.40 +0.1 5,119,276 + Psyr_4292 0.40 -0.6 5,119,277 - Psyr_4292 0.40 -1.7 5,119,277 - Psyr_4292 0.40 +0.0 5,119,277 - Psyr_4292 0.40 +0.5 5,119,277 - Psyr_4292 0.40 +0.3 5,119,277 - Psyr_4292 0.40 -1.5 5,119,327 - Psyr_4292 0.49 -0.5 5,119,327 - Psyr_4292 0.49 -0.4 5,119,328 + Psyr_4292 0.49 +1.9 5,119,328 + Psyr_4292 0.49 +0.3 5,119,328 + Psyr_4292 0.49 -0.1 5,119,328 + Psyr_4292 0.49 +0.1 5,119,328 + Psyr_4292 0.49 -0.5 5,119,328 + Psyr_4292 0.49 -0.8 5,119,328 + Psyr_4292 0.49 -0.2 5,119,328 + Psyr_4292 0.49 -0.5 5,119,329 - Psyr_4292 0.49 +0.2 5,119,329 - Psyr_4292 0.49 -0.3 5,119,329 - Psyr_4292 0.49 +1.5 5,119,329 - Psyr_4292 0.49 +1.7 5,119,329 - Psyr_4292 0.49 +0.9 5,119,329 - Psyr_4292 0.49 -0.4 5,119,357 + Psyr_4292 0.54 -0.8 5,119,358 - Psyr_4292 0.54 -0.8 5,119,358 - Psyr_4292 0.54 +0.7 5,119,612 + +0.6 5,119,613 - +0.2 5,119,613 - +0.2 5,119,614 + +0.2 5,119,614 + +0.0 5,119,615 - -1.1 5,119,615 - -0.2 5,119,615 - +1.3 5,119,641 - +1.9 5,119,704 - -0.1 5,119,756 + Psyr_4293 0.15 -0.6 5,119,756 + Psyr_4293 0.15 +0.4 5,119,894 + Psyr_4293 0.31 -0.6 5,119,895 - Psyr_4293 0.31 -2.1 5,119,906 + Psyr_4293 0.32 +0.8 5,119,906 + Psyr_4293 0.32 +0.2 5,119,906 + Psyr_4293 0.32 -0.8 5,119,906 + Psyr_4293 0.32 +0.9 5,119,906 + Psyr_4293 0.32 -0.3 5,119,906 + Psyr_4293 0.32 -1.3 5,119,906 + Psyr_4293 0.32 +0.4 5,119,906 + Psyr_4293 0.32 +0.1 5,119,907 - Psyr_4293 0.32 +0.9 5,119,907 - Psyr_4293 0.32 +1.1 5,119,907 - Psyr_4293 0.32 +0.1 5,119,907 - Psyr_4293 0.32 +0.1 5,119,907 - Psyr_4293 0.32 -0.8 5,119,907 - Psyr_4293 0.32 +0.1 5,119,960 + Psyr_4293 0.38 +0.2 5,119,960 + Psyr_4293 0.38 -1.5 5,119,960 + Psyr_4293 0.38 -1.5 5,119,960 + Psyr_4293 0.38 -1.2 5,119,960 + Psyr_4293 0.38 -0.6 5,119,960 + Psyr_4293 0.38 +0.0 5,119,961 - Psyr_4293 0.39 +0.6 5,119,961 - Psyr_4293 0.39 +0.2 5,119,961 - Psyr_4293 0.39 -1.1 5,119,961 - Psyr_4293 0.39 -0.7 5,119,961 - Psyr_4293 0.39 -0.4 5,119,961 - Psyr_4293 0.39 -0.1 5,119,961 - Psyr_4293 0.39 +1.2 5,120,269 + Psyr_4293 0.74 -1.6 5,120,270 - Psyr_4293 0.74 -1.2 5,120,420 + -0.6 5,120,510 + +1.9 5,120,511 - +2.5 5,120,511 - +0.9 5,120,511 - +1.3 5,120,511 - -0.6 5,120,511 - +1.6 5,120,530 - +0.9 5,120,530 - +0.6 5,120,601 + +1.5 5,120,601 + -0.5 5,120,601 + -0.3 5,120,601 + -0.2 5,120,601 + -0.5 5,120,601 + +1.2 5,120,601 + +0.0 5,120,602 - -0.5 5,120,602 - -0.4
Or see this region's nucleotide sequence