Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4170

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4168 and Psyr_4169 are separated by 32 nucleotidesPsyr_4169 and Psyr_4170 overlap by 4 nucleotidesPsyr_4170 and Psyr_4171 are separated by 98 nucleotides Psyr_4168: Psyr_4168 - K+-dependent Na+/Ca+ exchanger related-protein, at 4,957,874 to 4,958,905 _4168 Psyr_4169: Psyr_4169 - 4-carboxymuconolactone decarboxylase, at 4,958,938 to 4,959,321 _4169 Psyr_4170: Psyr_4170 - Auxin Efflux Carrier, at 4,959,318 to 4,960,268 _4170 Psyr_4171: Psyr_4171 - Twin-arginine translocation pathway signal, at 4,960,367 to 4,961,950 _4171 Position (kb) 4959 4960 4961Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4958.341 kb on + strand, within Psyr_4168at 4958.342 kb on - strand, within Psyr_4168at 4958.342 kb on - strand, within Psyr_4168at 4958.542 kb on + strand, within Psyr_4168at 4958.652 kb on + strand, within Psyr_4168at 4958.653 kb on - strand, within Psyr_4168at 4958.706 kb on - strand, within Psyr_4168at 4958.706 kb on - strand, within Psyr_4168at 4958.756 kb on + strand, within Psyr_4168at 4958.756 kb on + strand, within Psyr_4168at 4958.756 kb on + strand, within Psyr_4168at 4958.756 kb on + strand, within Psyr_4168at 4958.757 kb on - strand, within Psyr_4168at 4958.845 kb on - strandat 4958.845 kb on - strandat 4958.922 kb on + strandat 4958.922 kb on + strandat 4958.922 kb on + strandat 4958.923 kb on - strandat 4958.998 kb on + strand, within Psyr_4169at 4958.998 kb on + strand, within Psyr_4169at 4958.998 kb on + strand, within Psyr_4169at 4958.998 kb on + strand, within Psyr_4169at 4958.999 kb on - strand, within Psyr_4169at 4958.999 kb on - strand, within Psyr_4169at 4958.999 kb on - strand, within Psyr_4169at 4959.245 kb on - strand, within Psyr_4169at 4959.245 kb on - strand, within Psyr_4169at 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.305 kb on - strandat 4959.305 kb on - strandat 4959.305 kb on - strandat 4959.305 kb on - strandat 4959.305 kb on - strandat 4959.319 kb on + strandat 4959.320 kb on - strandat 4959.320 kb on - strandat 4959.415 kb on + strand, within Psyr_4170at 4959.415 kb on + strand, within Psyr_4170at 4959.416 kb on - strand, within Psyr_4170at 4959.416 kb on - strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.475 kb on + strand, within Psyr_4170at 4959.475 kb on + strand, within Psyr_4170at 4959.475 kb on + strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.809 kb on - strand, within Psyr_4170at 4959.809 kb on - strand, within Psyr_4170at 4959.820 kb on - strand, within Psyr_4170at 4959.820 kb on - strand, within Psyr_4170at 4959.820 kb on - strand, within Psyr_4170at 4959.841 kb on + strand, within Psyr_4170at 4959.841 kb on + strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.898 kb on + strand, within Psyr_4170at 4959.898 kb on + strand, within Psyr_4170at 4959.898 kb on + strand, within Psyr_4170at 4959.899 kb on - strand, within Psyr_4170at 4959.961 kb on + strand, within Psyr_4170at 4959.961 kb on + strand, within Psyr_4170at 4959.961 kb on + strand, within Psyr_4170at 4959.962 kb on - strand, within Psyr_4170at 4959.962 kb on - strand, within Psyr_4170at 4959.962 kb on - strand, within Psyr_4170at 4959.962 kb on - strand, within Psyr_4170at 4959.962 kb on - strand, within Psyr_4170at 4960.286 kb on + strandat 4960.286 kb on + strandat 4960.286 kb on + strandat 4960.287 kb on - strandat 4960.287 kb on - strandat 4960.287 kb on - strandat 4960.587 kb on + strand, within Psyr_4171at 4960.587 kb on + strand, within Psyr_4171at 4960.587 kb on + strand, within Psyr_4171at 4960.587 kb on + strand, within Psyr_4171at 4960.587 kb on + strand, within Psyr_4171at 4960.587 kb on + strand, within Psyr_4171at 4960.588 kb on - strand, within Psyr_4171at 4960.588 kb on - strand, within Psyr_4171at 4960.666 kb on - strand, within Psyr_4171at 4960.683 kb on + strand, within Psyr_4171at 4960.683 kb on + strand, within Psyr_4171at 4960.737 kb on + strand, within Psyr_4171at 4961.056 kb on - strand, within Psyr_4171at 4961.109 kb on + strand, within Psyr_4171

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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4,958,341 + Psyr_4168 0.45 +0.6
4,958,342 - Psyr_4168 0.45 +0.5
4,958,342 - Psyr_4168 0.45 -0.1
4,958,542 + Psyr_4168 0.65 -0.2
4,958,652 + Psyr_4168 0.75 -0.7
4,958,653 - Psyr_4168 0.75 -0.5
4,958,706 - Psyr_4168 0.81 +0.9
4,958,706 - Psyr_4168 0.81 +0.6
4,958,756 + Psyr_4168 0.85 +1.5
4,958,756 + Psyr_4168 0.85 +0.8
4,958,756 + Psyr_4168 0.85 +1.1
4,958,756 + Psyr_4168 0.85 +0.9
4,958,757 - Psyr_4168 0.86 +0.4
4,958,845 - -0.1
4,958,845 - +0.5
4,958,922 + -0.3
4,958,922 + +0.0
4,958,922 + +0.8
4,958,923 - +0.5
4,958,998 + Psyr_4169 0.16 +0.2
4,958,998 + Psyr_4169 0.16 +1.5
4,958,998 + Psyr_4169 0.16 -0.4
4,958,998 + Psyr_4169 0.16 +0.1
4,958,999 - Psyr_4169 0.16 -0.3
4,958,999 - Psyr_4169 0.16 +0.6
4,958,999 - Psyr_4169 0.16 -0.3
4,959,245 - Psyr_4169 0.80 -0.2
4,959,245 - Psyr_4169 0.80 -1.2
4,959,304 + +0.4
4,959,304 + -1.7
4,959,304 + +0.5
4,959,304 + +0.5
4,959,304 + -0.1
4,959,305 - +0.5
4,959,305 - +0.2
4,959,305 - -0.2
4,959,305 - +0.2
4,959,305 - -0.7
4,959,319 + +0.9
4,959,320 - +0.7
4,959,320 - -0.8
4,959,415 + Psyr_4170 0.10 +1.9
4,959,415 + Psyr_4170 0.10 -0.2
4,959,416 - Psyr_4170 0.10 -0.3
4,959,416 - Psyr_4170 0.10 +0.6
4,959,445 + Psyr_4170 0.13 +1.1
4,959,445 + Psyr_4170 0.13 -0.8
4,959,445 + Psyr_4170 0.13 +1.4
4,959,445 + Psyr_4170 0.13 +0.0
4,959,445 + Psyr_4170 0.13 +0.2
4,959,446 - Psyr_4170 0.13 -0.7
4,959,446 - Psyr_4170 0.13 -0.4
4,959,446 - Psyr_4170 0.13 +0.6
4,959,446 - Psyr_4170 0.13 +0.0
4,959,446 - Psyr_4170 0.13 +1.0
4,959,446 - Psyr_4170 0.13 +0.4
4,959,446 - Psyr_4170 0.13 -1.2
4,959,475 + Psyr_4170 0.17 +1.9
4,959,475 + Psyr_4170 0.17 +0.3
4,959,475 + Psyr_4170 0.17 +0.5
4,959,476 - Psyr_4170 0.17 -1.6
4,959,476 - Psyr_4170 0.17 -1.4
4,959,476 - Psyr_4170 0.17 +0.4
4,959,667 + Psyr_4170 0.37 -0.5
4,959,667 + Psyr_4170 0.37 -0.6
4,959,668 - Psyr_4170 0.37 +0.6
4,959,668 - Psyr_4170 0.37 +0.3
4,959,668 - Psyr_4170 0.37 +0.7
4,959,668 - Psyr_4170 0.37 +0.0
4,959,809 - Psyr_4170 0.52 +2.1
4,959,809 - Psyr_4170 0.52 +0.5
4,959,820 - Psyr_4170 0.53 +0.9
4,959,820 - Psyr_4170 0.53 +0.1
4,959,820 - Psyr_4170 0.53 +0.3
4,959,841 + Psyr_4170 0.55 +1.0
4,959,841 + Psyr_4170 0.55 +0.7
4,959,842 - Psyr_4170 0.55 -2.9
4,959,842 - Psyr_4170 0.55 -0.4
4,959,898 + Psyr_4170 0.61 +0.4
4,959,898 + Psyr_4170 0.61 +0.2
4,959,898 + Psyr_4170 0.61 +1.2
4,959,899 - Psyr_4170 0.61 +0.6
4,959,961 + Psyr_4170 0.68 -1.0
4,959,961 + Psyr_4170 0.68 -1.4
4,959,961 + Psyr_4170 0.68 +0.8
4,959,962 - Psyr_4170 0.68 +0.2
4,959,962 - Psyr_4170 0.68 +1.2
4,959,962 - Psyr_4170 0.68 -0.0
4,959,962 - Psyr_4170 0.68 +0.8
4,959,962 - Psyr_4170 0.68 -0.4
4,960,286 + +1.1
4,960,286 + -1.1
4,960,286 + +0.9
4,960,287 - +1.0
4,960,287 - +0.2
4,960,287 - +1.6
4,960,587 + Psyr_4171 0.14 +0.5
4,960,587 + Psyr_4171 0.14 +1.0
4,960,587 + Psyr_4171 0.14 +0.4
4,960,587 + Psyr_4171 0.14 -0.9
4,960,587 + Psyr_4171 0.14 -0.2
4,960,587 + Psyr_4171 0.14 +0.1
4,960,588 - Psyr_4171 0.14 -0.1
4,960,588 - Psyr_4171 0.14 +0.4
4,960,666 - Psyr_4171 0.19 +0.9
4,960,683 + Psyr_4171 0.20 +0.4
4,960,683 + Psyr_4171 0.20 -0.8
4,960,737 + Psyr_4171 0.23 +1.1
4,961,056 - Psyr_4171 0.43 -2.1
4,961,109 + Psyr_4171 0.47 +0.7

Or see this region's nucleotide sequence