Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3388

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3385 and Psyr_3386 overlap by 4 nucleotidesPsyr_3386 and Psyr_3387 overlap by 4 nucleotidesPsyr_3387 and Psyr_3388 overlap by 4 nucleotidesPsyr_3388 and Psyr_3389 are separated by 3 nucleotidesPsyr_3389 and Psyr_3390 overlap by 4 nucleotidesPsyr_3390 and Psyr_3391 overlap by 4 nucleotides Psyr_3385: Psyr_3385 - TPR repeat protein, at 4,044,431 to 4,045,624 _3385 Psyr_3386: Psyr_3386 - Cytochrome C biogenesis protein, at 4,045,621 to 4,046,091 _3386 Psyr_3387: Psyr_3387 - Periplasmic protein thiol:disulfide oxidoreductase DsbE, at 4,046,088 to 4,046,624 _3387 Psyr_3388: Psyr_3388 - Cytochrome c-type biogenesis protein CcmF, at 4,046,621 to 4,048,594 _3388 Psyr_3389: Psyr_3389 - CcmE/CycJ protein, at 4,048,598 to 4,049,065 _3389 Psyr_3390: Psyr_3390 - Heme exporter protein D (CcmD), at 4,049,062 to 4,049,238 _3390 Psyr_3391: Psyr_3391 - Cytochrome c-type biogenesis protein CcmC, at 4,049,235 to 4,050,038 _3391 Position (kb) 4046 4047 4048 4049Strain fitness (log2 ratio) -1 0 1at 4046.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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4,046,642 - +0.6

Or see this region's nucleotide sequence