Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3264

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3263 and Psyr_3264 are separated by 47 nucleotidesPsyr_3264 and Psyr_3265 are separated by 69 nucleotides Psyr_3263: Psyr_3263 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,907,349 to 3,908,374 _3263 Psyr_3264: Psyr_3264 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,908,422 to 3,909,999 _3264 Psyr_3265: Psyr_3265 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,910,069 to 3,911,004 _3265 Position (kb) 3908 3909 3910Strain fitness (log2 ratio) -2 -1 0 1 2at 3907.435 kb on - strandat 3907.662 kb on + strand, within Psyr_3263at 3907.702 kb on + strand, within Psyr_3263at 3907.703 kb on - strand, within Psyr_3263at 3907.703 kb on - strand, within Psyr_3263at 3907.703 kb on - strand, within Psyr_3263at 3907.734 kb on + strand, within Psyr_3263at 3907.734 kb on + strand, within Psyr_3263at 3907.735 kb on - strand, within Psyr_3263at 3907.740 kb on + strand, within Psyr_3263at 3907.740 kb on + strand, within Psyr_3263at 3907.740 kb on + strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.836 kb on + strand, within Psyr_3263at 3907.875 kb on + strand, within Psyr_3263at 3907.875 kb on + strand, within Psyr_3263at 3907.876 kb on - strand, within Psyr_3263at 3907.876 kb on - strand, within Psyr_3263at 3907.876 kb on - strand, within Psyr_3263at 3907.943 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.946 kb on - strand, within Psyr_3263at 3907.946 kb on - strand, within Psyr_3263at 3907.946 kb on - strand, within Psyr_3263at 3908.400 kb on + strandat 3908.613 kb on - strand, within Psyr_3264at 3908.620 kb on + strand, within Psyr_3264at 3908.620 kb on + strand, within Psyr_3264at 3908.668 kb on + strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.838 kb on - strand, within Psyr_3264at 3908.838 kb on - strand, within Psyr_3264at 3908.838 kb on - strand, within Psyr_3264at 3909.260 kb on + strand, within Psyr_3264at 3909.260 kb on + strand, within Psyr_3264at 3909.261 kb on - strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.756 kb on - strand, within Psyr_3264at 3910.005 kb on + strandat 3910.005 kb on + strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.071 kb on - strandat 3910.071 kb on - strandat 3910.421 kb on + strand, within Psyr_3265at 3910.421 kb on + strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.445 kb on - strand, within Psyr_3265at 3910.571 kb on + strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.870 kb on - strand, within Psyr_3265at 3910.870 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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3,907,435 - +1.9
3,907,662 + Psyr_3263 0.31 +1.1
3,907,702 + Psyr_3263 0.34 -0.4
3,907,703 - Psyr_3263 0.35 +0.3
3,907,703 - Psyr_3263 0.35 -0.1
3,907,703 - Psyr_3263 0.35 +1.9
3,907,734 + Psyr_3263 0.38 +1.6
3,907,734 + Psyr_3263 0.38 +1.0
3,907,735 - Psyr_3263 0.38 +0.5
3,907,740 + Psyr_3263 0.38 +0.2
3,907,740 + Psyr_3263 0.38 +1.0
3,907,740 + Psyr_3263 0.38 +1.2
3,907,741 - Psyr_3263 0.38 +0.8
3,907,741 - Psyr_3263 0.38 +0.1
3,907,741 - Psyr_3263 0.38 +0.2
3,907,741 - Psyr_3263 0.38 -0.8
3,907,836 + Psyr_3263 0.47 +2.1
3,907,875 + Psyr_3263 0.51 +2.0
3,907,875 + Psyr_3263 0.51 +1.5
3,907,876 - Psyr_3263 0.51 +1.2
3,907,876 - Psyr_3263 0.51 +2.5
3,907,876 - Psyr_3263 0.51 -0.5
3,907,943 + Psyr_3263 0.58 -2.3
3,907,945 + Psyr_3263 0.58 +0.6
3,907,946 - Psyr_3263 0.58 -0.2
3,907,946 - Psyr_3263 0.58 +0.5
3,907,946 - Psyr_3263 0.58 +0.7
3,908,400 + +0.9
3,908,613 - Psyr_3264 0.12 -1.5
3,908,620 + Psyr_3264 0.13 -1.2
3,908,620 + Psyr_3264 0.13 -0.1
3,908,668 + Psyr_3264 0.16 +0.3
3,908,837 + Psyr_3264 0.26 +0.9
3,908,837 + Psyr_3264 0.26 +0.5
3,908,837 + Psyr_3264 0.26 -0.5
3,908,838 - Psyr_3264 0.26 -0.2
3,908,838 - Psyr_3264 0.26 +1.1
3,908,838 - Psyr_3264 0.26 -0.7
3,909,260 + Psyr_3264 0.53 +0.6
3,909,260 + Psyr_3264 0.53 -0.2
3,909,261 - Psyr_3264 0.53 +2.5
3,909,329 + Psyr_3264 0.57 +0.8
3,909,329 + Psyr_3264 0.57 +0.3
3,909,329 + Psyr_3264 0.57 -0.2
3,909,329 + Psyr_3264 0.57 -0.1
3,909,330 - Psyr_3264 0.58 -1.3
3,909,330 - Psyr_3264 0.58 -1.5
3,909,330 - Psyr_3264 0.58 +0.7
3,909,330 - Psyr_3264 0.58 -2.1
3,909,330 - Psyr_3264 0.58 -0.1
3,909,330 - Psyr_3264 0.58 +0.6
3,909,330 - Psyr_3264 0.58 -0.5
3,909,330 - Psyr_3264 0.58 +0.1
3,909,330 - Psyr_3264 0.58 -1.1
3,909,330 - Psyr_3264 0.58 -0.8
3,909,330 - Psyr_3264 0.58 +0.3
3,909,443 + Psyr_3264 0.65 -0.6
3,909,443 + Psyr_3264 0.65 +0.2
3,909,443 + Psyr_3264 0.65 -0.1
3,909,443 + Psyr_3264 0.65 +0.4
3,909,444 - Psyr_3264 0.65 +0.8
3,909,444 - Psyr_3264 0.65 +0.9
3,909,444 - Psyr_3264 0.65 +2.5
3,909,444 - Psyr_3264 0.65 +1.8
3,909,444 - Psyr_3264 0.65 +0.1
3,909,756 - Psyr_3264 0.85 +0.8
3,910,005 + -0.1
3,910,005 + -1.0
3,910,006 - -1.5
3,910,006 - -0.1
3,910,006 - -1.9
3,910,071 - -0.2
3,910,071 - -0.2
3,910,421 + Psyr_3265 0.38 +0.4
3,910,421 + Psyr_3265 0.38 +0.1
3,910,422 - Psyr_3265 0.38 -0.9
3,910,422 - Psyr_3265 0.38 -2.1
3,910,422 - Psyr_3265 0.38 -0.1
3,910,422 - Psyr_3265 0.38 +0.0
3,910,422 - Psyr_3265 0.38 +0.1
3,910,444 + Psyr_3265 0.40 +1.0
3,910,445 - Psyr_3265 0.40 +0.4
3,910,571 + Psyr_3265 0.54 -0.8
3,910,572 - Psyr_3265 0.54 +0.6
3,910,572 - Psyr_3265 0.54 +0.7
3,910,870 - Psyr_3265 0.86 +0.5
3,910,870 - Psyr_3265 0.86 +0.5
3,910,884 - Psyr_3265 0.87 -0.2
3,910,884 - Psyr_3265 0.87 +1.4
3,910,884 - Psyr_3265 0.87 -0.7

Or see this region's nucleotide sequence