Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3232

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
3,870,599	+		Psyr_3231	0.37	+0.2
3,870,713	+		Psyr_3231	0.45	+0.7
3,870,713	+		Psyr_3231	0.45	+0.3
3,870,713	+		Psyr_3231	0.45	-3.3
3,870,713	+		Psyr_3231	0.45	+1.4
3,870,713	+		Psyr_3231	0.45	-0.5
3,870,713	+		Psyr_3231	0.45	-0.2
3,870,713	+		Psyr_3231	0.45	-1.5
3,870,713	+		Psyr_3231	0.45	-0.1
3,870,713	+		Psyr_3231	0.45	+0.1
3,870,713	+		Psyr_3231	0.45	+0.8
3,870,713	+		Psyr_3231	0.45	-0.6
3,870,713	+		Psyr_3231	0.45	-0.7
3,870,713	+		Psyr_3231	0.45	-0.0
3,870,713	+		Psyr_3231	0.45	+2.1
3,870,714	-		Psyr_3231	0.45	+1.5
3,870,714	-		Psyr_3231	0.45	+1.1
3,870,714	-		Psyr_3231	0.45	+1.1
3,870,714	-		Psyr_3231	0.45	+1.8
3,870,714	-		Psyr_3231	0.45	+0.9
3,870,714	-		Psyr_3231	0.45	+0.2
3,870,714	-		Psyr_3231	0.45	+1.6
3,870,714	-		Psyr_3231	0.45	+0.1
3,870,714	-		Psyr_3231	0.45	+0.5
3,870,714	-		Psyr_3231	0.45	+1.3
3,870,714	-		Psyr_3231	0.45	-1.3
3,870,714	-		Psyr_3231	0.45	-0.0
3,870,714	-		Psyr_3231	0.45	+0.3
3,870,715	+		Psyr_3231	0.45	-0.3
3,870,715	+		Psyr_3231	0.45	+0.5
3,870,716	-		Psyr_3231	0.46	-0.5
3,870,791	+		Psyr_3231	0.51	+2.1
3,871,280	+		Psyr_3231	0.86	+0.6
3,871,280	+		Psyr_3231	0.86	-0.6
3,871,397	+				-0.0
3,871,397	+				+0.3
3,871,398	-				+0.2
3,871,398	-				+0.2
3,871,579	-				+0.1
3,871,579	-				+0.1
3,871,579	-				+0.0
3,871,587	-				-0.8
3,871,638	+				+0.0
3,871,638	+				+0.3
3,871,638	+				+1.5
3,871,638	+				+1.7
3,871,638	+				-1.5
3,871,638	+				-0.9
3,871,638	+				+2.1
3,871,639	-				+0.6
3,871,639	-				+0.5
3,871,639	-				+1.0
3,871,778	-		Psyr_3232	0.20	+1.2
3,871,792	+		Psyr_3232	0.21	+0.5
3,871,793	-		Psyr_3232	0.21	+0.2
3,871,793	-		Psyr_3232	0.21	+0.3
3,871,916	-		Psyr_3232	0.32	+0.2
3,871,916	-		Psyr_3232	0.32	+2.8
3,871,928	+		Psyr_3232	0.33	+1.8
3,871,928	+		Psyr_3232	0.33	+0.9
3,871,929	-		Psyr_3232	0.34	+1.2
3,871,929	-		Psyr_3232	0.34	+3.3
3,872,003	-		Psyr_3232	0.40	-0.3
3,872,038	+		Psyr_3232	0.44	-0.1
3,872,038	+		Psyr_3232	0.44	+0.5
3,872,039	-		Psyr_3232	0.44	-0.3
3,872,308	+		Psyr_3232	0.68	+1.8
3,872,308	+		Psyr_3232	0.68	-0.1
3,872,308	+		Psyr_3232	0.68	+2.1
3,872,309	-		Psyr_3232	0.68	-0.1
3,872,309	-		Psyr_3232	0.68	+0.8
3,872,309	-		Psyr_3232	0.68	+0.5
3,872,309	-		Psyr_3232	0.68	-0.2
3,872,431	+		Psyr_3232	0.80	+1.8
3,872,432	-		Psyr_3232	0.80	+1.2
3,872,432	-		Psyr_3232	0.80	+0.3
3,872,438	+		Psyr_3232	0.80	-0.0
3,872,438	+		Psyr_3232	0.80	+0.4
3,872,438	+		Psyr_3232	0.80	+0.7
3,872,438	+		Psyr_3232	0.80	+0.6
3,872,438	+		Psyr_3232	0.80	+0.4
3,872,439	-		Psyr_3232	0.80	+1.2
3,872,510	-		Psyr_3232	0.87	+0.5
3,872,625	-				-0.3
3,872,625	-				-0.6
3,872,860	+				+0.4
3,872,860	+				+2.4
3,872,860	+				+1.1
3,872,860	+				+0.2
3,872,860	+				+0.7
3,872,861	-				+0.0
3,872,861	-				-0.2
3,872,861	-				+0.5
3,872,861	-				-1.1
3,872,878	+				+0.0
3,872,878	+				+0.9
3,872,879	-				+1.1
3,872,958	+				+0.1
3,872,959	-				+0.2
3,873,122	-		Psyr_3233	0.38	-0.5
3,873,132	-		Psyr_3233	0.39	+0.2
3,873,132	-		Psyr_3233	0.39	-0.5
3,873,132	-		Psyr_3233	0.39	-0.8
3,873,339	-		Psyr_3233	0.75	-0.1
3,873,339	-		Psyr_3233	0.75	+1.5
3,873,482	+				+0.9
3,873,483	-				+0.5
3,873,494	-				+0.5
3,873,569	+		Psyr_3234	0.11	+0.7
3,873,569	+		Psyr_3234	0.11	+0.6
3,873,569	+		Psyr_3234	0.11	-0.8
3,873,569	+		Psyr_3234	0.11	-0.9
3,873,570	-		Psyr_3234	0.11	+0.0
3,873,570	-		Psyr_3234	0.11	-0.5
3,873,573	+		Psyr_3234	0.11	+1.1