Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1770

Experiment: KB with capsaicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.125 mg/ml
2,013,388	-		Psyr_1769	0.31	+0.3
2,013,749	+		Psyr_1769	0.62	+0.2
2,013,749	+		Psyr_1769	0.62	-0.7
2,013,877	-		Psyr_1769	0.74	-0.5
2,013,981	+		Psyr_1769	0.83	+0.5
2,013,982	-		Psyr_1769	0.83	+1.2
2,013,991	-		Psyr_1769	0.84	+2.1
2,013,991	-		Psyr_1769	0.84	-0.6
2,013,991	-		Psyr_1769	0.84	-1.3
2,014,098	+				-1.2
2,014,148	+				-1.5
2,014,148	+				+0.1
2,014,292	+				-0.2
2,014,292	+				+0.2
2,014,292	+				+0.2
2,014,292	+				+1.7
2,014,292	+				+0.1
2,014,293	-				+0.2
2,014,293	-				+0.2
2,014,293	-				+0.9
2,014,293	-				+0.9
2,014,293	-				+0.8
2,014,293	-				+0.0
2,014,293	-				-1.3
2,014,710	+		Psyr_1770	0.48	+1.5
2,014,791	+		Psyr_1770	0.55	-0.0
2,014,792	-		Psyr_1770	0.55	+0.7
2,014,815	+		Psyr_1770	0.57	-0.1
2,014,971	+		Psyr_1770	0.72	+0.2
2,014,972	-		Psyr_1770	0.72	+0.1
2,015,025	+		Psyr_1770	0.77	+0.8
2,015,026	-		Psyr_1770	0.77	+0.0
2,015,314	+				-0.5
2,015,346	-				-0.7
2,015,384	+				+0.6
2,015,384	+				+0.3
2,015,385	-				+2.3
2,015,385	-				+0.5
2,015,385	-				+0.1
2,015,483	+				-0.9
2,015,483	+				+0.7
2,015,483	+				+0.2
2,015,486	+				-0.8
2,015,486	+				+2.7
2,015,486	+				-0.1
2,015,487	-				-0.3
2,015,487	-				+0.1
2,015,487	-				+1.3
2,015,487	-				-1.9
2,015,527	+				+0.3
2,015,557	+				-0.3
2,015,566	+				-0.1
2,015,566	+				+0.2
2,015,570	+				+0.2
2,015,570	+				-0.0
2,015,570	+				-0.8
2,015,570	+				-0.5
2,015,570	+				+0.2
2,015,570	+				-0.6
2,015,570	+				-0.7
2,015,570	+				+0.6
2,015,570	+				-0.5
2,015,571	-				+0.6
2,015,571	-				+0.5
2,015,571	-				-0.6
2,015,571	-				-0.1
2,015,571	-				+0.3
2,015,571	-				-0.0
2,015,571	-				-0.4
2,015,571	-				-0.9
2,015,733	-		Psyr_1771	0.10	+2.5
2,015,733	-		Psyr_1771	0.10	-0.6
2,015,789	+		Psyr_1771	0.14	-2.3
2,015,790	-		Psyr_1771	0.14	-0.8
2,015,882	+		Psyr_1771	0.19	+0.3
2,015,882	+		Psyr_1771	0.19	+0.2
2,015,882	+		Psyr_1771	0.19	+1.7
2,015,940	+		Psyr_1771	0.23	-0.3
2,015,941	-		Psyr_1771	0.23	+0.1
2,015,957	-		Psyr_1771	0.24	-0.1
2,015,990	+		Psyr_1771	0.26	+0.5
2,015,990	+		Psyr_1771	0.26	-0.3
2,015,991	-		Psyr_1771	0.26	-0.8
2,015,993	+		Psyr_1771	0.26	+0.0
2,015,993	+		Psyr_1771	0.26	+0.7
2,015,993	+		Psyr_1771	0.26	+1.2
2,015,993	+		Psyr_1771	0.26	-0.1
2,015,993	+		Psyr_1771	0.26	-1.1
2,015,993	+		Psyr_1771	0.26	+1.7
2,015,994	-		Psyr_1771	0.26	+1.1
2,015,994	-		Psyr_1771	0.26	+2.4
2,015,994	-		Psyr_1771	0.26	+0.5
2,015,994	-		Psyr_1771	0.26	+0.7
2,015,994	-		Psyr_1771	0.26	+1.7
2,015,994	-		Psyr_1771	0.26	+0.2
2,015,994	-		Psyr_1771	0.26	-1.2