Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0862 and Psyr_0863 are separated by 227 nucleotides Psyr_0863 and Psyr_0864 are separated by 108 nucleotides Psyr_0864 and Psyr_0865 are separated by 267 nucleotides
Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445
_0862
Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047
_0863
Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587
_0864
Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063
_0865
Position (kb) 984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.481 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.501 kb on - strand at 983.529 kb on + strand at 983.530 kb on - strand at 983.530 kb on - strand at 983.577 kb on + strand at 983.577 kb on + strand at 983.578 kb on - strand at 983.578 kb on - strand at 983.666 kb on - strand at 983.666 kb on - strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.680 kb on + strand at 983.742 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 984.067 kb on + strand at 984.178 kb on - strand at 984.353 kb on + strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864 at 984.489 kb on + strand, within Psyr_0864 at 984.490 kb on - strand, within Psyr_0864 at 984.490 kb on - strand, within Psyr_0864 at 984.490 kb on - strand, within Psyr_0864 at 984.490 kb on - strand, within Psyr_0864 at 984.605 kb on + strand at 984.606 kb on - strand at 984.652 kb on + strand at 984.692 kb on + strand at 984.781 kb on + strand at 984.781 kb on + strand at 984.782 kb on - strand at 984.860 kb on - strand at 984.935 kb on + strand at 984.969 kb on - strand at 984.969 kb on - strand at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.310 kb on - strand, within Psyr_0865 at 985.396 kb on + strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.542 kb on + strand, within Psyr_0865 at 985.542 kb on + strand, within Psyr_0865 at 985.543 kb on - strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 983,257 + -1.6 983,257 + +0.5 983,257 + +1.6 983,258 - -1.2 983,258 - +0.5 983,258 - -0.4 983,258 - +0.6 983,258 - +0.9 983,258 - +0.4 983,463 + -0.1 983,463 + +2.7 983,463 + -0.5 983,463 + +0.1 983,463 + +0.3 983,464 - +0.2 983,464 - -0.0 983,464 - +1.2 983,464 - +0.2 983,481 - +0.3 983,497 - -0.0 983,497 - -0.4 983,497 - +0.7 983,497 - +0.3 983,497 - -0.7 983,501 - +0.6 983,529 + +1.6 983,530 - +0.1 983,530 - +0.2 983,577 + +1.1 983,577 + +1.1 983,578 - +0.4 983,578 - -0.1 983,666 - +1.7 983,666 - +0.4 983,667 + +0.3 983,667 + +0.7 983,667 + -1.4 983,667 + -0.3 983,667 + +0.3 983,668 - -0.2 983,668 - -0.5 983,680 + +2.3 983,742 + Psyr_0863 0.18 -1.3 983,748 + Psyr_0863 0.20 -0.0 983,748 + Psyr_0863 0.20 +0.1 983,748 + Psyr_0863 0.20 +0.2 983,748 + Psyr_0863 0.20 +1.1 983,748 + Psyr_0863 0.20 -0.8 983,748 + Psyr_0863 0.20 +0.2 983,749 - Psyr_0863 0.20 -0.5 983,749 - Psyr_0863 0.20 +0.9 983,749 - Psyr_0863 0.20 -1.7 983,749 - Psyr_0863 0.20 -0.5 984,067 + +0.2 984,178 - -0.7 984,353 + Psyr_0864 0.46 -0.3 984,354 - Psyr_0864 0.46 +0.5 984,489 + Psyr_0864 0.77 -0.6 984,490 - Psyr_0864 0.77 +0.2 984,490 - Psyr_0864 0.77 -0.2 984,490 - Psyr_0864 0.77 -0.3 984,490 - Psyr_0864 0.77 -0.2 984,605 + -0.2 984,606 - +1.5 984,652 + -0.6 984,692 + +1.3 984,781 + +0.7 984,781 + +0.2 984,782 - -0.2 984,860 - -0.5 984,935 + -1.6 984,969 - +1.2 984,969 - -0.1 985,026 + Psyr_0865 0.14 +0.1 985,026 + Psyr_0865 0.14 +0.2 985,026 + Psyr_0865 0.14 +1.9 985,026 + Psyr_0865 0.14 -0.2 985,027 - Psyr_0865 0.14 +0.7 985,027 - Psyr_0865 0.14 +1.5 985,027 - Psyr_0865 0.14 -0.5 985,027 - Psyr_0865 0.14 +0.7 985,027 - Psyr_0865 0.14 -0.1 985,027 - Psyr_0865 0.14 +0.3 985,027 - Psyr_0865 0.14 -2.1 985,310 - Psyr_0865 0.38 -0.4 985,396 + Psyr_0865 0.45 +0.7 985,501 - Psyr_0865 0.53 +1.2 985,501 - Psyr_0865 0.53 +0.2 985,501 - Psyr_0865 0.53 -1.7 985,501 - Psyr_0865 0.53 +2.6 985,542 + Psyr_0865 0.57 +1.0 985,542 + Psyr_0865 0.57 +0.2 985,543 - Psyr_0865 0.57 -0.4 985,548 + Psyr_0865 0.57 +1.0 985,548 + Psyr_0865 0.57 +1.9 985,548 + Psyr_0865 0.57 +1.5 985,548 + Psyr_0865 0.57 -0.9 985,548 + Psyr_0865 0.57 -0.1 985,548 + Psyr_0865 0.57 +0.4 985,549 - Psyr_0865 0.57 +2.3 985,549 - Psyr_0865 0.57 -0.8 985,549 - Psyr_0865 0.57 +0.3 985,549 - Psyr_0865 0.57 -2.2 985,549 - Psyr_0865 0.57 -0.2 985,549 - Psyr_0865 0.57 -0.0 985,549 - Psyr_0865 0.57 +1.3 985,549 - Psyr_0865 0.57 +0.7 985,549 - Psyr_0865 0.57 +2.3 985,549 - Psyr_0865 0.57 +0.5 985,549 - Psyr_0865 0.57 -0.2 985,549 - Psyr_0865 0.57 +0.9 985,549 - Psyr_0865 0.57 +0.3 985,549 - Psyr_0865 0.57 -0.2 985,549 - Psyr_0865 0.57 -0.6
Or see this region's nucleotide sequence