Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0540 and Psyr_0541 are separated by 48 nucleotides Psyr_0541 and Psyr_0542 are separated by 204 nucleotides
Psyr_0540: Psyr_0540 - oxidoreductase, FAD-binding protein, at 610,174 to 611,349
_0540
Psyr_0541: Psyr_0541 - Small multidrug resistance protein, at 611,398 to 611,730
_0541
Psyr_0542: Psyr_0542 - Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal, at 611,935 to 613,080
_0542
Position (kb) 611
612 Strain fitness (log2 ratio) -2
-1
0
1 at 611.382 kb on - strand at 611.382 kb on - strand at 611.382 kb on - strand at 611.382 kb on - strand at 611.382 kb on - strand at 611.383 kb on + strand at 611.383 kb on + strand at 611.384 kb on - strand at 611.384 kb on - strand at 611.384 kb on - strand at 611.496 kb on - strand, within Psyr_0541 at 611.552 kb on + strand, within Psyr_0541 at 611.552 kb on + strand, within Psyr_0541 at 611.552 kb on + strand, within Psyr_0541 at 611.552 kb on + strand, within Psyr_0541 at 611.552 kb on + strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.553 kb on - strand, within Psyr_0541 at 611.717 kb on + strand at 611.717 kb on + strand at 611.717 kb on + strand at 611.718 kb on - strand at 611.718 kb on - strand at 611.718 kb on - strand at 611.718 kb on - strand at 611.720 kb on + strand at 611.720 kb on + strand at 611.762 kb on + strand at 611.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 611,382 - +0.9 611,382 - -0.3 611,382 - -0.1 611,382 - +1.4 611,382 - +0.9 611,383 + +0.0 611,383 + -2.3 611,384 - +0.8 611,384 - -0.1 611,384 - -0.7 611,496 - Psyr_0541 0.29 +0.8 611,552 + Psyr_0541 0.46 -0.6 611,552 + Psyr_0541 0.46 +0.1 611,552 + Psyr_0541 0.46 -0.2 611,552 + Psyr_0541 0.46 +0.7 611,552 + Psyr_0541 0.46 -1.6 611,553 - Psyr_0541 0.47 +0.6 611,553 - Psyr_0541 0.47 -2.2 611,553 - Psyr_0541 0.47 +0.1 611,553 - Psyr_0541 0.47 +0.0 611,553 - Psyr_0541 0.47 -0.4 611,553 - Psyr_0541 0.47 -0.2 611,717 + +1.6 611,717 + -1.2 611,717 + -0.4 611,718 - +1.7 611,718 - -1.0 611,718 - +0.6 611,718 - -0.2 611,720 + +1.5 611,720 + -0.5 611,762 + +1.6 611,763 - -0.3
Or see this region's nucleotide sequence