Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0417

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0415 and Psyr_0416 are separated by 3 nucleotidesPsyr_0416 and Psyr_0417 are separated by 0 nucleotidesPsyr_0417 and Psyr_0418 are separated by 269 nucleotidesPsyr_0418 and Psyr_0419 overlap by 4 nucleotides Psyr_0415: Psyr_0415 - N-acyl-D-amino-acid deacylase, at 453,090 to 454,565 _0415 Psyr_0416: Psyr_0416 - transcriptional regulator, RpiR family, at 454,569 to 455,429 _0416 Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779 _0417 Psyr_0418: Psyr_0418 - conserved domain protein, at 457,049 to 457,696 _0418 Psyr_0419: Psyr_0419 - conserved hypothetical protein, at 457,693 to 458,958 _0419 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 454.558 kb on + strandat 454.730 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.536 kb on + strandat 455.537 kb on - strandat 455.537 kb on - strandat 455.537 kb on - strandat 455.537 kb on - strandat 455.833 kb on - strand, within Psyr_0417at 455.888 kb on + strand, within Psyr_0417at 455.969 kb on + strand, within Psyr_0417at 455.969 kb on + strand, within Psyr_0417at 456.011 kb on + strand, within Psyr_0417at 456.011 kb on + strand, within Psyr_0417at 456.181 kb on + strand, within Psyr_0417at 456.181 kb on + strand, within Psyr_0417at 456.182 kb on - strand, within Psyr_0417at 456.229 kb on + strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.260 kb on - strand, within Psyr_0417at 456.260 kb on - strand, within Psyr_0417at 456.473 kb on + strand, within Psyr_0417at 456.578 kb on + strand, within Psyr_0417at 456.610 kb on + strand, within Psyr_0417at 456.611 kb on - strand, within Psyr_0417at 456.611 kb on - strand, within Psyr_0417at 456.611 kb on - strand, within Psyr_0417at 456.746 kb on - strandat 456.779 kb on + strandat 456.780 kb on - strandat 456.881 kb on + strandat 456.917 kb on + strandat 456.917 kb on + strandat 456.918 kb on - strandat 456.918 kb on - strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.925 kb on - strandat 456.925 kb on - strandat 456.930 kb on + strandat 457.078 kb on - strandat 457.105 kb on + strandat 457.106 kb on - strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.115 kb on - strand, within Psyr_0418at 457.115 kb on - strand, within Psyr_0418at 457.139 kb on + strand, within Psyr_0418at 457.139 kb on + strand, within Psyr_0418at 457.139 kb on + strand, within Psyr_0418at 457.140 kb on - strand, within Psyr_0418at 457.140 kb on - strand, within Psyr_0418at 457.175 kb on + strand, within Psyr_0418at 457.231 kb on - strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.390 kb on - strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.477 kb on - strand, within Psyr_0418at 457.477 kb on - strand, within Psyr_0418at 457.513 kb on + strand, within Psyr_0418at 457.523 kb on + strand, within Psyr_0418at 457.524 kb on - strand, within Psyr_0418at 457.524 kb on - strand, within Psyr_0418at 457.524 kb on - strand, within Psyr_0418at 457.539 kb on + strand, within Psyr_0418at 457.539 kb on + strand, within Psyr_0418at 457.614 kb on + strand, within Psyr_0418at 457.614 kb on + strand, within Psyr_0418at 457.615 kb on - strand, within Psyr_0418at 457.723 kb on + strandat 457.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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454,558 + -0.0
454,730 + Psyr_0416 0.19 +0.4
454,732 + Psyr_0416 0.19 -0.9
454,732 + Psyr_0416 0.19 +1.4
454,732 + Psyr_0416 0.19 +0.6
454,732 + Psyr_0416 0.19 -0.3
454,732 + Psyr_0416 0.19 -0.3
454,733 - Psyr_0416 0.19 -0.5
454,733 - Psyr_0416 0.19 -0.2
454,733 - Psyr_0416 0.19 -0.7
454,733 - Psyr_0416 0.19 +0.5
454,733 - Psyr_0416 0.19 -0.7
454,733 - Psyr_0416 0.19 +0.0
454,733 - Psyr_0416 0.19 +0.0
455,409 + +1.2
455,409 + -0.5
455,409 + +0.2
455,409 + +0.8
455,409 + +0.4
455,409 + -0.1
455,409 + -0.5
455,410 - -0.4
455,410 - +0.8
455,410 - +0.0
455,536 + -0.2
455,537 - -1.0
455,537 - -0.3
455,537 - -0.2
455,537 - +0.6
455,833 - Psyr_0417 0.30 -0.5
455,888 + Psyr_0417 0.34 -0.3
455,969 + Psyr_0417 0.40 -1.3
455,969 + Psyr_0417 0.40 +0.2
456,011 + Psyr_0417 0.43 -0.4
456,011 + Psyr_0417 0.43 +0.5
456,181 + Psyr_0417 0.56 -1.0
456,181 + Psyr_0417 0.56 -0.3
456,182 - Psyr_0417 0.56 -0.0
456,229 + Psyr_0417 0.59 +0.1
456,230 - Psyr_0417 0.59 +0.3
456,260 - Psyr_0417 0.61 -0.6
456,260 - Psyr_0417 0.61 +0.1
456,473 + Psyr_0417 0.77 -1.8
456,578 + Psyr_0417 0.85 -0.4
456,610 + Psyr_0417 0.87 -0.7
456,611 - Psyr_0417 0.87 -1.3
456,611 - Psyr_0417 0.87 -1.1
456,611 - Psyr_0417 0.87 +0.1
456,746 - -0.1
456,779 + +0.2
456,780 - +0.3
456,881 + -0.1
456,917 + -0.5
456,917 + -0.0
456,918 - +2.7
456,918 - -0.6
456,924 + -0.4
456,924 + +2.2
456,925 - -0.1
456,925 - -1.1
456,930 + -0.3
457,078 - +0.3
457,105 + +0.3
457,106 - +1.5
457,111 + -0.0
457,111 + -0.1
457,111 + +0.7
457,111 + +0.8
457,112 - -0.2
457,112 - +0.5
457,112 - -0.7
457,112 - +0.8
457,112 - +0.2
457,112 - +0.3
457,115 - Psyr_0418 0.10 -0.3
457,115 - Psyr_0418 0.10 -0.2
457,139 + Psyr_0418 0.14 -0.6
457,139 + Psyr_0418 0.14 -0.5
457,139 + Psyr_0418 0.14 +0.3
457,140 - Psyr_0418 0.14 -0.3
457,140 - Psyr_0418 0.14 +0.2
457,175 + Psyr_0418 0.19 +0.3
457,231 - Psyr_0418 0.28 +0.5
457,389 + Psyr_0418 0.52 -2.9
457,389 + Psyr_0418 0.52 -0.0
457,389 + Psyr_0418 0.52 +1.2
457,389 + Psyr_0418 0.52 +0.3
457,390 - Psyr_0418 0.53 +0.8
457,476 + Psyr_0418 0.66 -1.4
457,476 + Psyr_0418 0.66 +0.9
457,476 + Psyr_0418 0.66 -2.9
457,476 + Psyr_0418 0.66 +1.3
457,477 - Psyr_0418 0.66 +1.0
457,477 - Psyr_0418 0.66 +0.1
457,513 + Psyr_0418 0.72 -0.3
457,523 + Psyr_0418 0.73 -0.7
457,524 - Psyr_0418 0.73 +0.3
457,524 - Psyr_0418 0.73 -0.4
457,524 - Psyr_0418 0.73 +1.2
457,539 + Psyr_0418 0.76 +2.9
457,539 + Psyr_0418 0.76 +0.3
457,614 + Psyr_0418 0.87 +0.2
457,614 + Psyr_0418 0.87 -0.6
457,615 - Psyr_0418 0.87 -1.4
457,723 + +0.0
457,723 + -1.8

Or see this region's nucleotide sequence