Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0142

Experiment: KB with capsaicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0141 and Psyr_0142 are separated by 1 nucleotidesPsyr_0142 and Psyr_0143 are separated by 9 nucleotides Psyr_0141: Psyr_0141 - Binding-protein-dependent transport systems inner membrane component, at 152,409 to 153,431 _0141 Psyr_0142: Psyr_0142 - ABC transporter, at 153,433 to 155,016 _0142 Psyr_0143: Psyr_0143 - chemotaxis sensory transducer, at 155,026 to 156,546 _0143 Position (kb) 153 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.640 kb on + strand, within Psyr_0141at 152.640 kb on + strand, within Psyr_0141at 152.641 kb on - strand, within Psyr_0141at 152.641 kb on - strand, within Psyr_0141at 152.641 kb on - strand, within Psyr_0141at 152.652 kb on + strand, within Psyr_0141at 152.652 kb on + strand, within Psyr_0141at 152.715 kb on + strand, within Psyr_0141at 152.716 kb on - strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.910 kb on + strand, within Psyr_0141at 152.913 kb on + strand, within Psyr_0141at 152.913 kb on + strand, within Psyr_0141at 152.980 kb on - strand, within Psyr_0141at 152.980 kb on - strand, within Psyr_0141at 152.980 kb on - strand, within Psyr_0141at 153.111 kb on + strand, within Psyr_0141at 153.111 kb on + strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 154.172 kb on - strand, within Psyr_0142at 154.306 kb on + strand, within Psyr_0142at 154.307 kb on - strand, within Psyr_0142at 154.307 kb on - strand, within Psyr_0142at 154.846 kb on + strand, within Psyr_0142at 154.846 kb on + strand, within Psyr_0142at 154.846 kb on + strand, within Psyr_0142at 154.846 kb on + strand, within Psyr_0142at 154.846 kb on + strand, within Psyr_0142at 154.847 kb on - strand, within Psyr_0142at 154.847 kb on - strand, within Psyr_0142at 154.847 kb on - strand, within Psyr_0142at 154.847 kb on - strand, within Psyr_0142at 154.972 kb on + strandat 154.972 kb on + strandat 154.972 kb on + strandat 154.973 kb on - strandat 155.028 kb on - strandat 155.226 kb on + strand, within Psyr_0143at 155.413 kb on + strand, within Psyr_0143at 155.414 kb on - strand, within Psyr_0143at 155.709 kb on + strand, within Psyr_0143at 155.709 kb on + strand, within Psyr_0143at 155.710 kb on - strand, within Psyr_0143at 155.710 kb on - strand, within Psyr_0143at 155.854 kb on + strand, within Psyr_0143at 155.855 kb on - strand, within Psyr_0143at 155.855 kb on - strand, within Psyr_0143at 155.855 kb on - strand, within Psyr_0143

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml
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152,574 + Psyr_0141 0.16 -0.1
152,574 + Psyr_0141 0.16 -0.4
152,574 + Psyr_0141 0.16 +0.8
152,574 + Psyr_0141 0.16 +0.7
152,574 + Psyr_0141 0.16 +0.1
152,574 + Psyr_0141 0.16 -0.3
152,575 - Psyr_0141 0.16 +0.3
152,575 - Psyr_0141 0.16 -0.9
152,575 - Psyr_0141 0.16 +0.8
152,575 - Psyr_0141 0.16 -0.9
152,575 - Psyr_0141 0.16 +0.4
152,575 - Psyr_0141 0.16 -0.6
152,575 - Psyr_0141 0.16 -0.4
152,575 - Psyr_0141 0.16 -0.6
152,595 + Psyr_0141 0.18 +0.6
152,595 + Psyr_0141 0.18 -0.1
152,595 + Psyr_0141 0.18 +0.3
152,595 + Psyr_0141 0.18 -1.0
152,595 + Psyr_0141 0.18 +0.7
152,595 + Psyr_0141 0.18 -0.2
152,595 + Psyr_0141 0.18 +2.9
152,595 + Psyr_0141 0.18 +0.0
152,595 + Psyr_0141 0.18 -0.5
152,596 - Psyr_0141 0.18 -0.8
152,596 - Psyr_0141 0.18 +0.0
152,596 - Psyr_0141 0.18 -0.5
152,596 - Psyr_0141 0.18 -0.4
152,596 - Psyr_0141 0.18 -0.2
152,596 - Psyr_0141 0.18 +0.1
152,596 - Psyr_0141 0.18 +0.4
152,596 - Psyr_0141 0.18 +2.3
152,596 - Psyr_0141 0.18 +0.7
152,596 - Psyr_0141 0.18 -0.9
152,640 + Psyr_0141 0.23 -1.0
152,640 + Psyr_0141 0.23 +0.2
152,641 - Psyr_0141 0.23 +0.1
152,641 - Psyr_0141 0.23 +0.7
152,641 - Psyr_0141 0.23 +0.7
152,652 + Psyr_0141 0.24 +0.2
152,652 + Psyr_0141 0.24 -0.5
152,715 + Psyr_0141 0.30 +2.9
152,716 - Psyr_0141 0.30 -1.4
152,730 + Psyr_0141 0.31 +0.4
152,730 + Psyr_0141 0.31 +0.6
152,730 + Psyr_0141 0.31 -0.3
152,730 + Psyr_0141 0.31 +1.7
152,730 + Psyr_0141 0.31 -0.1
152,731 - Psyr_0141 0.31 -0.6
152,731 - Psyr_0141 0.31 -1.0
152,731 - Psyr_0141 0.31 -0.7
152,731 - Psyr_0141 0.31 +0.3
152,731 - Psyr_0141 0.31 -1.3
152,731 - Psyr_0141 0.31 -1.0
152,910 + Psyr_0141 0.49 +0.4
152,913 + Psyr_0141 0.49 -0.7
152,913 + Psyr_0141 0.49 +0.3
152,980 - Psyr_0141 0.56 -0.9
152,980 - Psyr_0141 0.56 -0.1
152,980 - Psyr_0141 0.56 -0.6
153,111 + Psyr_0141 0.69 -2.2
153,111 + Psyr_0141 0.69 -0.7
153,112 - Psyr_0141 0.69 +1.0
153,112 - Psyr_0141 0.69 +0.5
153,112 - Psyr_0141 0.69 +0.1
153,201 + Psyr_0141 0.77 +0.3
153,201 + Psyr_0141 0.77 -0.9
153,201 + Psyr_0141 0.77 +0.1
153,202 - Psyr_0141 0.78 -0.4
153,202 - Psyr_0141 0.78 -0.4
153,202 - Psyr_0141 0.78 +0.2
153,202 - Psyr_0141 0.78 +0.0
154,172 - Psyr_0142 0.47 -1.2
154,306 + Psyr_0142 0.55 +0.6
154,307 - Psyr_0142 0.55 -0.7
154,307 - Psyr_0142 0.55 +1.3
154,846 + Psyr_0142 0.89 -0.5
154,846 + Psyr_0142 0.89 -1.1
154,846 + Psyr_0142 0.89 -1.1
154,846 + Psyr_0142 0.89 -2.0
154,846 + Psyr_0142 0.89 -1.0
154,847 - Psyr_0142 0.89 +1.3
154,847 - Psyr_0142 0.89 +0.9
154,847 - Psyr_0142 0.89 +0.6
154,847 - Psyr_0142 0.89 -0.1
154,972 + -0.7
154,972 + +0.4
154,972 + -2.3
154,973 - -0.0
155,028 - -0.2
155,226 + Psyr_0143 0.13 +1.3
155,413 + Psyr_0143 0.25 +1.0
155,414 - Psyr_0143 0.26 -0.1
155,709 + Psyr_0143 0.45 +2.5
155,709 + Psyr_0143 0.45 -0.5
155,710 - Psyr_0143 0.45 +1.4
155,710 - Psyr_0143 0.45 -0.5
155,854 + Psyr_0143 0.54 +0.4
155,855 - Psyr_0143 0.55 +0.3
155,855 - Psyr_0143 0.55 +0.4
155,855 - Psyr_0143 0.55 -0.2

Or see this region's nucleotide sequence