Strain Fitness in Pseudomonas putida KT2440 around PP_5478

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
2,036,649	-				+0.5
2,036,670	-				+0.1
2,036,757	+		PP_1810	0.12	+0.1
2,036,766	+		PP_1810	0.13	+0.4
2,036,784	+		PP_1810	0.16	-0.0
2,036,785	-		PP_1810	0.16	+0.4
2,036,827	+		PP_1810	0.22	-0.8
2,036,827	+		PP_1810	0.22	+0.6
2,036,827	+		PP_1810	0.22	+0.4
2,036,828	-		PP_1810	0.22	+0.0
2,036,828	-		PP_1810	0.22	-0.4
2,036,891	-		PP_1810	0.30	-1.4
2,036,891	-		PP_1810	0.30	-0.5
2,036,893	+		PP_1810	0.31	+0.3
2,036,893	+		PP_1810	0.31	+0.5
2,036,894	-		PP_1810	0.31	+0.1
2,036,894	-		PP_1810	0.31	+1.9
2,037,082	+		PP_1810	0.56	-0.4
2,037,112	+		PP_1810	0.60	-0.5
2,037,246	-		PP_1810	0.78	-0.9
2,037,308	-		PP_1810	0.87	+1.2
2,037,377	-				+0.1
2,037,432	+				-0.3
2,037,432	+				-0.4
2,037,432	+				-0.7
2,037,432	+				+0.3
2,037,433	-				+0.1
2,037,576	+				+0.3
2,037,576	+				+0.6
2,037,577	-				+0.9
2,037,669	+		PP_5478	0.23	+0.7
2,037,669	+		PP_5478	0.23	-0.5
2,037,719	+		PP_5478	0.41	-1.3
2,037,719	+		PP_5478	0.41	-1.0
2,037,736	-		PP_5478	0.47	+1.0
2,037,762	+		PP_5478	0.57	-0.3
2,037,762	+		PP_5478	0.57	-0.5
2,037,763	-		PP_5478	0.57	-0.8
2,037,763	-		PP_5478	0.57	-0.1
2,037,763	-		PP_5478	0.57	-1.7
2,037,883	+				+0.3
2,037,883	+				+0.3
2,037,884	-				-1.3
2,037,884	-				-0.8
2,037,884	-				-0.9
2,037,884	-				-0.1
2,037,896	+				+0.2
2,037,896	+				+2.0
2,037,897	-				+0.9
2,037,897	-				+0.7
2,037,897	-				-0.8
2,037,945	+				+1.4
2,037,971	+				-0.4
2,037,971	+				-1.9
2,038,004	+				-0.7
2,038,004	+				-0.5
2,038,005	-				-0.6
2,038,031	+				-0.6
2,038,032	-				+0.4
2,038,137	+				-0.9
2,038,137	+				-0.4
2,038,137	+				+0.1
2,038,137	+				+1.0
2,038,137	+				+1.0
2,038,137	+				+0.2
2,038,138	-				+0.9
2,038,311	+				-0.2
2,038,338	+				+0.1
2,038,338	+				-0.7
2,038,339	-				+0.3
2,038,339	-				-0.8
2,038,339	-				-0.8
2,038,382	+				+0.6
2,038,383	-				-1.8
2,038,465	+		PP_1811	0.11	-0.5
2,038,466	-		PP_1811	0.11	+0.3
2,038,466	-		PP_1811	0.11	-0.1
2,038,466	-		PP_1811	0.11	+0.1
2,038,466	-		PP_1811	0.11	-0.4
2,038,490	+		PP_1811	0.13	+0.5
2,038,490	+		PP_1811	0.13	-3.4
2,038,491	-		PP_1811	0.13	+0.2
2,038,491	-		PP_1811	0.13	+1.3
2,038,517	-		PP_1811	0.16	+0.6
2,038,627	-		PP_1811	0.25	+0.9
2,038,644	+		PP_1811	0.27	-0.5
2,038,644	+		PP_1811	0.27	+0.5
2,038,660	-		PP_1811	0.28	+1.0
2,038,660	-		PP_1811	0.28	-0.9
2,038,749	+		PP_1811	0.36	+0.5
2,038,749	+		PP_1811	0.36	+0.1