Strain Fitness in Pseudomonas putida KT2440 around PP_5177

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
5,902,924	-		PP_5175	0.90	-0.1
5,902,973	+				-1.4
5,902,973	+				+0.1
5,902,974	-				-0.2
5,902,990	+				+0.8
5,902,990	+				+1.2
5,902,990	+				-0.1
5,902,991	-				+0.1
5,902,991	-				+0.9
5,902,991	-				-0.1
5,902,991	-				-1.9
5,902,991	-				+0.2
5,902,991	-				-2.2
5,903,087	+				+0.8
5,903,088	-				+0.6
5,903,088	-				-0.5
5,903,088	-				-0.4
5,903,103	-				-0.2
5,903,193	+				+0.7
5,903,193	+				-1.3
5,903,193	+				+0.0
5,903,194	-				-0.2
5,903,194	-				-1.6
5,903,194	-				-2.1
5,903,194	-				+0.2
5,903,194	-				-1.9
5,903,194	-				-1.7
5,903,199	+				-0.4
5,903,200	-				-0.2
5,903,252	-				+0.7
5,903,350	+		PP_5176	0.10	-0.5
5,903,474	-		PP_5176	0.39	-0.6
5,903,656	+		PP_5176	0.80	-0.5
5,903,657	-		PP_5176	0.80	-0.2
5,903,705	+				+0.6
5,903,705	+				-0.3
5,903,706	-				-0.3
5,903,706	-				-0.3
5,903,976	-		PP_5177	0.14	-0.1
5,904,122	-		PP_5177	0.30	-2.0
5,904,299	+		PP_5177	0.50	-1.7
5,904,299	+		PP_5177	0.50	+0.4
5,904,299	+		PP_5177	0.50	+0.8
5,904,299	+		PP_5177	0.50	+0.9
5,904,299	+		PP_5177	0.50	-1.2
5,904,299	+		PP_5177	0.50	-0.9
5,904,300	-		PP_5177	0.50	+0.0
5,904,300	-		PP_5177	0.50	-0.7
5,904,318	+		PP_5177	0.52	-1.2
5,904,318	+		PP_5177	0.52	-1.8
5,904,318	+		PP_5177	0.52	-0.1
5,904,318	+		PP_5177	0.52	+0.7
5,904,318	+		PP_5177	0.52	-1.9
5,904,319	-		PP_5177	0.52	-1.4
5,904,319	-		PP_5177	0.52	-3.1
5,904,342	+		PP_5177	0.55	-1.7
5,904,539	+		PP_5177	0.77	+0.1
5,904,605	+		PP_5177	0.84	-1.1
5,904,606	-		PP_5177	0.84	-1.9
5,904,662	+				+0.0
5,904,663	-				-0.1
5,904,663	-				+0.5
5,904,689	+				-1.4
5,904,690	-				+0.4
5,904,773	+				-0.8
5,904,881	+		PP_5178	0.15	-1.7
5,904,993	+		PP_5178	0.27	-1.5
5,905,071	-		PP_5178	0.36	-1.0
5,905,112	-		PP_5178	0.40	+1.7
5,905,112	-		PP_5178	0.40	-1.4
5,905,112	-		PP_5178	0.40	-1.1
5,905,112	-		PP_5178	0.40	-1.8
5,905,117	+		PP_5178	0.41	-0.2
5,905,117	+				+1.8
5,905,118	-		PP_5178	0.41	-1.4
5,905,118	-		PP_5178	0.41	-2.6
5,905,133	-		PP_5178	0.43	-1.6
5,905,133	-		PP_5178	0.43	-0.4
5,905,133	-		PP_5178	0.43	-1.6
5,905,240	+		PP_5178	0.54	-1.5
5,905,400	-		PP_5178	0.72	-2.2
5,905,411	+		PP_5178	0.73	+0.1
5,905,412	-		PP_5178	0.73	-1.3
5,905,412	-		PP_5178	0.73	-2.4
5,905,412	-		PP_5178	0.73	-1.2
5,905,438	+		PP_5178	0.76	-1.3
5,905,439	-		PP_5178	0.76	-1.4
5,905,480	+				+0.2
5,905,481	-		PP_5178	0.80	+0.0
5,905,481	-		PP_5178	0.80	-1.1
5,905,486	+		PP_5178	0.81	-0.2
5,905,486	+		PP_5178	0.81	-1.8
5,905,486	+		PP_5178	0.81	+0.2
5,905,486	+		PP_5178	0.81	+0.7
5,905,486	+		PP_5178	0.81	-1.7
5,905,486	+		PP_5178	0.81	-1.1
5,905,487	-		PP_5178	0.81	-0.1
5,905,487	-		PP_5178	0.81	-0.6
5,905,487	-		PP_5178	0.81	-0.1
5,905,487	-		PP_5178	0.81	-0.0
5,905,497	-		PP_5178	0.82	-2.0
5,905,498	+		PP_5178	0.82	-0.0
5,905,697	+				-2.0
5,905,697	+				-0.0
5,905,697	+				-0.3
5,905,697	+				-0.7
5,905,697	+				-0.9
5,905,697	+				-0.5
5,905,697	+				-1.7
5,905,698	-				+0.0
5,905,698	-				-1.5
5,905,698	-				-1.9
5,905,701	+				+0.1
5,905,701	+				-1.2
5,905,701	+				-1.1
5,905,701	+				+0.3
5,905,701	+				+0.2
5,905,701	+				+0.7
5,905,701	+				-1.0
5,905,701	+				-2.6
5,905,701	+				-0.4
5,905,701	+				-0.4
5,905,702	-				-1.9
5,905,702	-				-0.8
5,905,702	-				-0.1
5,905,702	-				+0.2
5,905,702	-				-0.8
5,905,702	-				-0.6
5,905,730	-				-0.4