Strain Fitness in Pseudomonas putida KT2440 around PP_5147

Experiment: Formaldehyde 0.03125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5145 and PP_5146 are separated by 22 nucleotidesPP_5146 and PP_5147 are separated by 141 nucleotidesPP_5147 and PP_5148 are separated by 130 nucleotidesPP_5148 and PP_5149 are separated by 147 nucleotides PP_5145: PP_5145 - phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins), at 5,870,373 to 5,872,652 _5145 PP_5146: PP_5146 - RNA pyrophosphohydrolase, at 5,872,675 to 5,873,154 _5146 PP_5147: PP_5147 - Hydrolase, haloacid dehalogenase-like family, at 5,873,296 to 5,873,952 _5147 PP_5148: PP_5148 - conserved membrane protein of unknown function, at 5,874,083 to 5,874,508 _5148 PP_5149: PP_5149 - threonine deaminase, at 5,874,656 to 5,876,170 _5149 Position (kb) 5873 5874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5872.360 kb on + strand, within PP_5145at 5872.361 kb on - strand, within PP_5145at 5872.531 kb on + strandat 5872.531 kb on + strandat 5872.644 kb on - strandat 5872.703 kb on - strandat 5872.763 kb on + strand, within PP_5146at 5872.763 kb on + strand, within PP_5146at 5872.769 kb on + strand, within PP_5146at 5872.769 kb on + strand, within PP_5146at 5872.769 kb on + strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.770 kb on - strand, within PP_5146at 5872.899 kb on + strand, within PP_5146at 5872.899 kb on + strand, within PP_5146at 5872.900 kb on - strand, within PP_5146at 5872.903 kb on + strand, within PP_5146at 5872.903 kb on + strand, within PP_5146at 5872.904 kb on - strand, within PP_5146at 5872.904 kb on - strand, within PP_5146at 5872.904 kb on - strand, within PP_5146at 5872.960 kb on + strand, within PP_5146at 5872.961 kb on - strand, within PP_5146at 5873.004 kb on - strand, within PP_5146at 5873.037 kb on + strand, within PP_5146at 5873.037 kb on + strand, within PP_5146at 5873.038 kb on - strand, within PP_5146at 5873.086 kb on + strand, within PP_5146at 5873.086 kb on + strand, within PP_5146at 5873.326 kb on - strandat 5873.326 kb on - strandat 5873.365 kb on + strand, within PP_5147at 5873.365 kb on + strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.402 kb on - strand, within PP_5147at 5873.402 kb on - strand, within PP_5147at 5873.434 kb on + strand, within PP_5147at 5873.434 kb on + strand, within PP_5147at 5873.435 kb on - strand, within PP_5147at 5873.435 kb on - strand, within PP_5147at 5873.464 kb on + strand, within PP_5147at 5873.719 kb on + strand, within PP_5147at 5873.720 kb on - strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5874.034 kb on + strandat 5874.034 kb on + strandat 5874.056 kb on + strandat 5874.057 kb on - strandat 5874.157 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.171 kb on - strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.387 kb on + strand, within PP_5148at 5874.388 kb on - strand, within PP_5148at 5874.523 kb on + strandat 5874.524 kb on - strandat 5874.524 kb on - strandat 5874.576 kb on + strandat 5874.577 kb on - strandat 5874.603 kb on - strandat 5874.603 kb on - strandat 5874.644 kb on + strandat 5874.645 kb on - strandat 5874.675 kb on + strandat 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.938 kb on - strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.947 kb on - strand, within PP_5149

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Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
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5,872,360 + PP_5145 0.87 -1.2
5,872,361 - PP_5145 0.87 -0.7
5,872,531 + -0.9
5,872,531 + -1.5
5,872,644 - -0.2
5,872,703 - -0.2
5,872,763 + PP_5146 0.18 -0.8
5,872,763 + PP_5146 0.18 -0.7
5,872,769 + PP_5146 0.20 -4.1
5,872,769 + PP_5146 0.20 -1.1
5,872,769 + PP_5146 0.20 -1.7
5,872,770 - PP_5146 0.20 -1.0
5,872,770 - PP_5146 0.20 +0.8
5,872,770 - PP_5146 0.20 -0.4
5,872,770 - PP_5146 0.20 +0.8
5,872,770 - PP_5146 0.20 +1.8
5,872,770 - PP_5146 0.20 -1.4
5,872,770 - PP_5146 0.20 -0.2
5,872,770 - PP_5146 0.20 -0.7
5,872,770 - PP_5146 0.20 -2.4
5,872,899 + PP_5146 0.47 -1.3
5,872,899 + PP_5146 0.47 -1.6
5,872,900 - PP_5146 0.47 +0.8
5,872,903 + PP_5146 0.47 -0.1
5,872,903 + PP_5146 0.47 -0.6
5,872,904 - PP_5146 0.48 +0.2
5,872,904 - PP_5146 0.48 -1.4
5,872,904 - PP_5146 0.48 -2.4
5,872,960 + PP_5146 0.59 -1.0
5,872,961 - PP_5146 0.60 -1.0
5,873,004 - PP_5146 0.69 +0.8
5,873,037 + PP_5146 0.75 +0.6
5,873,037 + PP_5146 0.75 -0.2
5,873,038 - PP_5146 0.76 -0.2
5,873,086 + PP_5146 0.86 -2.1
5,873,086 + PP_5146 0.86 -2.1
5,873,326 - +1.1
5,873,326 - +1.7
5,873,365 + PP_5147 0.11 -0.4
5,873,365 + PP_5147 0.11 +0.1
5,873,366 - PP_5147 0.11 +0.1
5,873,366 - PP_5147 0.11 -0.1
5,873,366 - PP_5147 0.11 -0.2
5,873,402 - PP_5147 0.16 -0.0
5,873,402 - PP_5147 0.16 -1.5
5,873,434 + PP_5147 0.21 +0.8
5,873,434 + PP_5147 0.21 +0.4
5,873,435 - PP_5147 0.21 +0.9
5,873,435 - PP_5147 0.21 -0.4
5,873,464 + PP_5147 0.26 +0.9
5,873,719 + PP_5147 0.64 -1.5
5,873,720 - PP_5147 0.65 -0.5
5,873,730 + PP_5147 0.66 -0.8
5,873,730 + PP_5147 0.66 -2.1
5,873,734 - PP_5147 0.67 +0.3
5,873,734 - PP_5147 0.67 +1.0
5,873,739 + PP_5147 0.67 -0.2
5,873,739 + PP_5147 0.67 +0.3
5,873,740 - PP_5147 0.68 -0.0
5,873,740 - PP_5147 0.68 -0.6
5,873,740 - PP_5147 0.68 +0.5
5,873,741 + PP_5147 0.68 +1.1
5,873,741 + PP_5147 0.68 +0.8
5,873,741 + PP_5147 0.68 -0.7
5,873,741 + PP_5147 0.68 +0.6
5,873,742 - PP_5147 0.68 +0.6
5,873,742 - PP_5147 0.68 -0.7
5,873,742 - PP_5147 0.68 -1.4
5,873,742 - PP_5147 0.68 -0.6
5,873,818 + PP_5147 0.79 -0.6
5,873,818 + PP_5147 0.79 -1.0
5,873,819 - PP_5147 0.80 +1.1
5,873,819 - PP_5147 0.80 +0.7
5,873,819 - PP_5147 0.80 -1.1
5,873,824 + PP_5147 0.80 +0.3
5,873,824 + PP_5147 0.80 -0.2
5,873,825 - PP_5147 0.81 +0.4
5,873,825 - PP_5147 0.81 -0.0
5,874,034 + +0.5
5,874,034 + +0.3
5,874,056 + -0.2
5,874,057 - +0.1
5,874,157 + PP_5148 0.17 -1.0
5,874,170 + PP_5148 0.20 +1.3
5,874,170 + PP_5148 0.20 -0.6
5,874,171 - PP_5148 0.21 -0.4
5,874,238 + PP_5148 0.36 -0.2
5,874,238 + PP_5148 0.36 +0.1
5,874,238 + PP_5148 0.36 +0.4
5,874,238 + PP_5148 0.36 +0.5
5,874,239 - PP_5148 0.37 -1.4
5,874,239 - PP_5148 0.37 +0.8
5,874,239 - PP_5148 0.37 +0.1
5,874,239 - PP_5148 0.37 +0.6
5,874,239 - PP_5148 0.37 +1.2
5,874,296 + PP_5148 0.50 +1.0
5,874,296 + PP_5148 0.50 -0.1
5,874,297 - PP_5148 0.50 -0.4
5,874,297 - PP_5148 0.50 -0.1
5,874,387 + PP_5148 0.71 -1.0
5,874,388 - PP_5148 0.72 +0.3
5,874,523 + +0.4
5,874,524 - -0.9
5,874,524 - +0.7
5,874,576 + +0.9
5,874,577 - +0.9
5,874,603 - -2.3
5,874,603 - +0.4
5,874,644 + +0.5
5,874,645 - -0.2
5,874,675 + -2.1
5,874,937 + PP_5149 0.19 +0.1
5,874,937 + PP_5149 0.19 -0.4
5,874,937 + PP_5149 0.19 -0.7
5,874,938 - PP_5149 0.19 +0.4
5,874,946 + PP_5149 0.19 +0.2
5,874,946 + PP_5149 0.19 -0.0
5,874,947 - PP_5149 0.19 -0.6

Or see this region's nucleotide sequence