Strain Fitness in Pseudomonas putida KT2440 around PP_5056

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
5,759,962	+		PP_5053	0.85	-0.4
5,759,962	+		PP_5053	0.85	-0.0
5,759,962	+		PP_5053	0.85	+0.1
5,759,962	+				+1.8
5,759,962	+		PP_5053	0.85	-1.0
5,759,962	+		PP_5053	0.85	-0.5
5,759,962	+		PP_5053	0.85	-1.7
5,759,962	+		PP_5053	0.85	+1.5
5,759,962	+		PP_5053	0.85	+0.2
5,759,962	+		PP_5053	0.85	+0.5
5,759,963	-		PP_5053	0.86	-0.0
5,759,963	-		PP_5053	0.86	+0.8
5,759,963	-		PP_5053	0.86	-0.2
5,759,963	-		PP_5053	0.86	-1.0
5,759,963	-		PP_5053	0.86	-0.3
5,759,963	-		PP_5053	0.86	-0.1
5,759,963	-		PP_5053	0.86	+1.8
5,760,043	+				-0.4
5,760,048	+				+2.1
5,760,048	+				-1.3
5,760,048	+				+0.7
5,760,118	+		PP_5054	0.18	+1.2
5,760,119	-		PP_5054	0.18	+1.1
5,760,119	-		PP_5054	0.18	+0.1
5,760,119	-		PP_5054	0.18	-1.2
5,760,269	-		PP_5054	0.77	+1.3
5,760,296	-		PP_5054	0.88	+1.8
5,760,307	+				+0.8
5,760,326	+				+0.9
5,760,326	+				-2.1
5,760,326	+				+0.6
5,760,327	-				+0.4
5,760,327	-				+1.1
5,760,327	-				+0.6
5,760,327	-				+0.9
5,760,395	+		PP_5055	0.16	-1.2
5,760,395	+		PP_5055	0.16	+1.5
5,760,474	+		PP_5055	0.35	-0.1
5,760,540	+		PP_5055	0.51	-0.3
5,760,541	-		PP_5055	0.51	-0.5
5,760,541	-		PP_5055	0.51	+0.5
5,760,554	+		PP_5055	0.55	+0.8
5,760,555	-		PP_5055	0.55	-0.4
5,760,704	+				-0.4
5,760,704	+				+1.2
5,760,704	+				-1.5
5,760,705	-				-0.2
5,760,705	-				+0.2
5,760,705	-				-0.8
5,760,705	-				-0.5
5,760,779	+				+0.2
5,760,779	+				-0.4
5,760,779	+				-0.8
5,760,779	+				-0.4
5,760,779	+				-0.1
5,760,780	-				-1.3
5,760,780	-				-0.3
5,760,780	-				-0.3
5,760,780	-				-0.4
5,760,780	-				+0.1
5,760,876	+				-0.3
5,760,877	-				-0.1
5,760,877	-				-0.4
5,760,894	+				-0.0
5,762,588	+				+0.5
5,762,588	+				+0.5
5,762,588	+				+1.1
5,762,588	+				+0.5
5,762,589	-				-0.4
5,762,589	-				+1.2
5,762,589	-				+1.2
5,762,589	-				-1.1
5,762,589	-				+0.1
5,762,589	-				+0.1
5,762,589	-				+0.4
5,762,589	-				+0.6
5,762,591	+				-0.4
5,762,591	+				-0.4
5,762,591	+				-0.3
5,762,592	-				+0.6
5,762,592	-				-0.7
5,762,647	+				+0.6
5,762,648	-				+1.4
5,762,648	-				-0.6
5,762,857	+		PP_5057	0.18	-1.0
5,762,857	+		PP_5057	0.18	-1.1
5,762,858	-		PP_5057	0.18	-1.7
5,762,988	+		PP_5057	0.28	-0.2
5,762,988	+		PP_5057	0.28	-1.7
5,762,989	-		PP_5057	0.28	+0.3
5,762,989	-		PP_5057	0.28	+0.3
5,763,045	+		PP_5057	0.32	+0.6
5,763,046	-		PP_5057	0.32	-1.1
5,763,046	-		PP_5057	0.32	+0.5
5,763,046	-		PP_5057	0.32	-0.0
5,763,046	-		PP_5057	0.32	+0.8
5,763,046	-		PP_5057	0.32	+0.5
5,763,046	-		PP_5057	0.32	-0.2
5,763,048	+		PP_5057	0.32	+0.1
5,763,048	+		PP_5057	0.32	+0.4
5,763,048	+		PP_5057	0.32	-0.5
5,763,048	+		PP_5057	0.32	+0.6
5,763,049	-		PP_5057	0.32	+0.8
5,763,054	+		PP_5057	0.33	+0.4
5,763,054	+		PP_5057	0.33	-0.5
5,763,226	+		PP_5057	0.46	+0.7