Experiment: Formaldehyde 0.03125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4960 and PP_4961 are separated by 100 nucleotides PP_4961 and PP_4962 are separated by 160 nucleotides PP_4962 and PP_4963 overlap by 1 nucleotides PP_4963 and PP_4964 are separated by 12 nucleotides
PP_4960: PP_4960 - Fructose-bisphosphate aldolase, at 5,651,405 to 5,652,469
_4960
PP_4961: PP_4961 - putative Lipoprotein, at 5,652,570 to 5,652,899
_4961
PP_4962: PP_4962 - conserved exported protein of unknown function, at 5,653,060 to 5,653,311
_4962
PP_4963: PP_4963 - Phosphoglycerate kinase, at 5,653,311 to 5,654,474
_4963
PP_4964: PP_4964 - D-erythrose 4-phosphate dehydrogenase, at 5,654,487 to 5,655,545
_4964
Position (kb) 5653
5654
5655 Strain fitness (log2 ratio) -2
-1
0
1 at 5652.620 kb on - strand, within PP_4961 at 5652.710 kb on - strand, within PP_4961 at 5652.960 kb on + strand at 5652.961 kb on - strand at 5652.961 kb on - strand at 5653.050 kb on + strand at 5653.050 kb on + strand at 5653.050 kb on + strand at 5653.051 kb on - strand at 5653.173 kb on - strand, within PP_4962 at 5654.818 kb on - strand, within PP_4964 at 5654.824 kb on - strand, within PP_4964 at 5654.951 kb on - strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.227 kb on + strand, within PP_4964 at 5655.228 kb on - strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.230 kb on - strand, within PP_4964 at 5655.306 kb on + strand, within PP_4964
Per-strain Table
Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol% remove 5,652,620 - PP_4961 0.15 +1.3 5,652,710 - PP_4961 0.42 -0.8 5,652,960 + -0.3 5,652,961 - +0.2 5,652,961 - +1.0 5,653,050 + +0.1 5,653,050 + +0.7 5,653,050 + -0.1 5,653,051 - -0.0 5,653,173 - PP_4962 0.45 -0.0 5,654,818 - PP_4964 0.31 +0.2 5,654,824 - PP_4964 0.32 +1.3 5,654,951 - PP_4964 0.44 +0.2 5,655,007 + PP_4964 0.49 -0.5 5,655,007 + PP_4964 0.49 -0.8 5,655,007 + PP_4964 0.49 +0.0 5,655,008 - PP_4964 0.49 -0.5 5,655,008 - PP_4964 0.49 -0.8 5,655,227 + PP_4964 0.70 -1.4 5,655,228 - PP_4964 0.70 -0.8 5,655,229 + PP_4964 0.70 -0.7 5,655,229 + PP_4964 0.70 +0.6 5,655,229 + PP_4964 0.70 -1.0 5,655,230 - PP_4964 0.70 -2.2 5,655,306 + PP_4964 0.77 -0.5
Or see this region's nucleotide sequence