Strain Fitness in Pseudomonas putida KT2440 around PP_4656

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
5,280,637	+		PP_4654	0.79	-0.1
5,280,638	-		PP_4654	0.79	+0.3
5,280,691	-		PP_4654	0.84	+0.1
5,280,727	+		PP_4654	0.87	-0.5
5,280,727	+		PP_4654	0.87	-0.2
5,280,728	-		PP_4654	0.87	+0.5
5,280,728	-		PP_4654	0.87	+0.2
5,280,728	-		PP_4654	0.87	-0.4
5,280,823	+				-0.3
5,280,824	-				-0.8
5,280,825	+				+0.5
5,280,825	+				-0.9
5,280,834	+				-0.7
5,280,834	+				+0.0
5,280,835	-				+0.3
5,280,874	+				-0.3
5,280,874	+				+0.1
5,280,874	+				+0.2
5,280,875	-				+0.6
5,280,941	+				+0.7
5,280,941	-				-1.0
5,280,954	+				-0.1
5,280,955	-				+0.2
5,281,050	-				-0.8
5,281,052	-				+0.4
5,281,177	+		PP_4655	0.28	+1.2
5,281,320	-		PP_4655	0.52	+0.2
5,281,360	+		PP_4655	0.59	-0.4
5,281,360	+		PP_4655	0.59	-0.3
5,281,360	+		PP_4655	0.59	+0.8
5,281,361	-		PP_4655	0.59	-0.0
5,281,361	-		PP_4655	0.59	-0.0
5,281,361	-		PP_4655	0.59	-0.6
5,281,361	-		PP_4655	0.59	-0.4
5,281,361	-		PP_4655	0.59	-0.9
5,281,372	+		PP_4655	0.61	-0.1
5,281,373	-		PP_4655	0.61	+1.0
5,281,441	+		PP_4655	0.72	+0.9
5,281,441	+		PP_4655	0.72	-0.5
5,281,442	-		PP_4655	0.72	-0.5
5,281,442	-		PP_4655	0.72	+1.8
5,281,443	+		PP_4655	0.72	+0.0
5,281,443	+		PP_4655	0.72	+0.7
5,281,444	-		PP_4655	0.72	+0.2
5,281,444	-		PP_4655	0.72	+0.4
5,281,444	-		PP_4655	0.72	+0.0
5,281,444	-		PP_4655	0.72	-0.1
5,281,444	-		PP_4655	0.72	+0.6
5,281,444	-		PP_4655	0.72	-0.2
5,281,444	-		PP_4655	0.72	+0.5
5,281,444	-		PP_4655	0.72	-0.8
5,281,561	+				-0.6
5,281,561	+				-0.3
5,281,562	-				-0.8
5,281,676	+				-1.2
5,281,802	+		PP_4656	0.25	-0.4
5,281,802	+		PP_4656	0.25	+0.5
5,281,858	-		PP_4656	0.33	-0.7
5,281,899	-		PP_4656	0.39	-0.5
5,281,928	+		PP_4656	0.43	-0.6
5,281,928	+		PP_4656	0.43	+0.2
5,281,928	+		PP_4656	0.43	-0.5
5,281,928	+		PP_4656	0.43	+0.4
5,281,928	+		PP_4656	0.43	-0.2
5,281,928	+		PP_4656	0.43	+0.7
5,281,929	-		PP_4656	0.43	+0.1
5,281,929	-		PP_4656	0.43	-0.4
5,281,931	+		PP_4656	0.43	+0.1
5,281,932	-		PP_4656	0.43	+0.4
5,281,932	-		PP_4656	0.43	-0.4
5,281,994	+				+2.0
5,281,994	+		PP_4656	0.52	+0.9
5,282,267	+		PP_4656	0.90	+0.9
5,282,268	-		PP_4656	0.90	-0.9
5,282,268	-		PP_4656	0.90	+0.0
5,282,278	-				-1.2
5,282,278	-				-0.6
5,282,286	+				-0.4
5,282,286	+				-0.7
5,282,286	+				+0.3
5,282,286	+				+0.1
5,282,287	-				-0.3
5,282,423	+				-0.6
5,282,424	-				+0.3
5,282,424	-				-0.3
5,282,443	+				-0.3
5,282,443	+				+0.5
5,282,443	+				+0.0
5,282,443	+				-0.6
5,282,443	+				+0.5
5,282,443	+				+1.0
5,282,443	+				+0.5
5,282,444	-				+0.4
5,282,444	-				+0.1
5,282,444	-				+0.3
5,282,444	-				-0.2
5,282,444	-				+0.2
5,282,444	-				+0.1
5,282,448	-				-0.7
5,282,467	-				-0.2
5,282,502	+				+0.5
5,282,502	+				-2.5
5,282,503	-				+0.5
5,282,865	-		PP_4657	0.41	+0.1
5,282,945	+		PP_4657	0.50	-0.7
5,282,945	+		PP_4657	0.50	-2.1
5,282,969	+		PP_4657	0.52	-1.6
5,282,970	-		PP_4657	0.52	+0.0
5,282,970	-		PP_4657	0.52	+0.1
5,283,038	+		PP_4657	0.59	+0.4
5,283,038	+		PP_4657	0.59	+0.4
5,283,038	+		PP_4657	0.59	-0.3
5,283,039	-		PP_4657	0.59	+0.3
5,283,039	-		PP_4657	0.59	+0.0
5,283,039	-		PP_4657	0.59	+1.4
5,283,039	-		PP_4657	0.59	+0.0
5,283,189	+		PP_4657	0.75	-0.2
5,283,310	-		PP_4657	0.88	+0.1