Strain Fitness in Pseudomonas putida KT2440 around PP_4589

Experiment: Formaldehyde 0.03125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4587 and PP_4588 are separated by 145 nucleotidesPP_4588 and PP_4589 are separated by 113 nucleotidesPP_4589 and PP_4590 are separated by 2 nucleotidesPP_4590 and PP_4591 overlap by 4 nucleotides PP_4587: PP_4587 - conserved protein of unknown function, at 5,206,474 to 5,206,923 _4587 PP_4588: PP_4588 - putative oxidoreductase (nitroreductase family), at 5,207,069 to 5,207,662 _4588 PP_4589: PP_4589 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 5,207,776 to 5,208,708 _4589 PP_4590: PP_4590 - conserved protein of unknown function, at 5,208,711 to 5,209,004 _4590 PP_4591: PP_4591 - Ribonuclease D, at 5,209,001 to 5,210,134 _4591 Position (kb) 5207 5208 5209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5206.784 kb on + strand, within PP_4587at 5206.784 kb on + strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5207.032 kb on + strandat 5207.032 kb on + strandat 5207.033 kb on - strandat 5207.213 kb on + strand, within PP_4588at 5207.213 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.241 kb on - strandat 5207.274 kb on - strand, within PP_4588at 5207.461 kb on + strand, within PP_4588at 5207.462 kb on - strand, within PP_4588at 5207.462 kb on - strand, within PP_4588at 5207.525 kb on + strand, within PP_4588at 5207.526 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.661 kb on - strandat 5207.717 kb on + strandat 5207.733 kb on + strandat 5207.780 kb on + strandat 5207.781 kb on - strandat 5207.828 kb on + strandat 5207.828 kb on + strandat 5207.828 kb on + strandat 5207.828 kb on + strandat 5208.092 kb on + strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.093 kb on - strand, within PP_4589at 5208.138 kb on - strand, within PP_4589at 5208.228 kb on - strand, within PP_4589at 5208.283 kb on + strand, within PP_4589at 5208.284 kb on - strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.391 kb on + strand, within PP_4589at 5208.392 kb on - strand, within PP_4589at 5208.392 kb on - strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.396 kb on + strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.397 kb on - strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.398 kb on + strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.399 kb on - strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.408 kb on + strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.409 kb on - strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.410 kb on + strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.411 kb on - strand, within PP_4589at 5208.439 kb on + strand, within PP_4589at 5208.440 kb on - strand, within PP_4589at 5208.440 kb on - strand, within PP_4589at 5208.514 kb on + strand, within PP_4589at 5208.760 kb on + strand, within PP_4590at 5208.760 kb on + strand, within PP_4590at 5208.761 kb on - strand, within PP_4590at 5208.761 kb on - strandat 5208.761 kb on - strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.945 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.949 kb on + strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.950 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.956 kb on - strand, within PP_4590at 5208.983 kb on - strandat 5209.093 kb on - strandat 5209.420 kb on + strand, within PP_4591at 5209.420 kb on + strand, within PP_4591at 5209.427 kb on - strand, within PP_4591at 5209.481 kb on + strand, within PP_4591at 5209.481 kb on + strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.482 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591at 5209.606 kb on - strand, within PP_4591

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
remove
5,206,784 + PP_4587 0.69 -0.3
5,206,784 + PP_4587 0.69 -1.3
5,206,785 - PP_4587 0.69 -0.2
5,206,785 - PP_4587 0.69 +0.3
5,206,785 - PP_4587 0.69 -1.8
5,206,785 - PP_4587 0.69 -1.2
5,206,787 + PP_4587 0.70 -0.1
5,206,787 + PP_4587 0.70 -0.7
5,206,787 + PP_4587 0.70 -1.0
5,206,788 - PP_4587 0.70 +0.3
5,206,788 - PP_4587 0.70 +0.8
5,206,788 - PP_4587 0.70 +0.1
5,206,788 - PP_4587 0.70 +0.5
5,207,032 + -0.1
5,207,032 + +1.5
5,207,033 - -0.3
5,207,213 + PP_4588 0.24 +0.5
5,207,213 + PP_4588 0.24 +0.5
5,207,215 + PP_4588 0.25 -0.4
5,207,215 + PP_4588 0.25 -0.3
5,207,215 + PP_4588 0.25 -0.7
5,207,240 + PP_4588 0.29 -0.4
5,207,240 + PP_4588 0.29 +1.0
5,207,240 + PP_4588 0.29 +0.3
5,207,241 - +1.6
5,207,274 - PP_4588 0.35 +0.9
5,207,461 + PP_4588 0.66 -0.7
5,207,462 - PP_4588 0.66 +0.1
5,207,462 - PP_4588 0.66 +0.0
5,207,525 + PP_4588 0.77 -0.2
5,207,526 - PP_4588 0.77 +0.3
5,207,530 - PP_4588 0.78 +0.5
5,207,530 - PP_4588 0.78 -3.6
5,207,530 - PP_4588 0.78 -0.4
5,207,661 - +1.0
5,207,717 + -1.3
5,207,733 + +0.9
5,207,780 + -0.5
5,207,781 - -0.2
5,207,828 + -0.5
5,207,828 + +0.2
5,207,828 + +1.0
5,207,828 + +0.1
5,208,092 + PP_4589 0.34 +0.9
5,208,093 - PP_4589 0.34 +0.7
5,208,093 - PP_4589 0.34 +1.1
5,208,093 - PP_4589 0.34 -0.3
5,208,138 - PP_4589 0.39 -0.6
5,208,228 - PP_4589 0.48 +0.1
5,208,283 + PP_4589 0.54 -0.0
5,208,284 - PP_4589 0.54 -0.1
5,208,391 + PP_4589 0.66 +0.1
5,208,391 + PP_4589 0.66 -0.1
5,208,391 + PP_4589 0.66 -1.4
5,208,392 - PP_4589 0.66 +0.4
5,208,392 - PP_4589 0.66 +0.3
5,208,396 + PP_4589 0.66 +0.2
5,208,396 + PP_4589 0.66 +0.5
5,208,396 + PP_4589 0.66 -0.5
5,208,396 + PP_4589 0.66 -0.2
5,208,396 + PP_4589 0.66 +0.1
5,208,396 + PP_4589 0.66 +0.9
5,208,397 - PP_4589 0.67 -1.6
5,208,397 - PP_4589 0.67 -0.5
5,208,397 - PP_4589 0.67 +0.3
5,208,397 - PP_4589 0.67 -1.2
5,208,397 - PP_4589 0.67 +0.8
5,208,397 - PP_4589 0.67 +0.5
5,208,398 + PP_4589 0.67 -0.1
5,208,398 + PP_4589 0.67 -0.4
5,208,398 + PP_4589 0.67 -1.0
5,208,398 + PP_4589 0.67 +0.6
5,208,398 + PP_4589 0.67 +0.1
5,208,398 + PP_4589 0.67 +0.5
5,208,398 + PP_4589 0.67 -0.2
5,208,399 - PP_4589 0.67 +0.7
5,208,399 - PP_4589 0.67 +0.4
5,208,399 - PP_4589 0.67 +0.6
5,208,399 - PP_4589 0.67 -0.3
5,208,399 - PP_4589 0.67 +0.5
5,208,399 - PP_4589 0.67 +1.5
5,208,399 - PP_4589 0.67 +0.2
5,208,399 - PP_4589 0.67 +0.2
5,208,408 + PP_4589 0.68 +0.2
5,208,408 + PP_4589 0.68 +0.1
5,208,408 + PP_4589 0.68 +1.3
5,208,408 + PP_4589 0.68 -0.4
5,208,408 + PP_4589 0.68 -1.3
5,208,408 + PP_4589 0.68 +1.1
5,208,408 + PP_4589 0.68 -0.4
5,208,408 + PP_4589 0.68 -0.4
5,208,408 + PP_4589 0.68 +1.1
5,208,408 + PP_4589 0.68 -0.5
5,208,409 - PP_4589 0.68 +0.4
5,208,409 - PP_4589 0.68 +0.3
5,208,409 - PP_4589 0.68 +0.8
5,208,409 - PP_4589 0.68 -0.6
5,208,409 - PP_4589 0.68 -0.3
5,208,409 - PP_4589 0.68 -0.4
5,208,410 + PP_4589 0.68 +1.1
5,208,410 + PP_4589 0.68 -0.1
5,208,410 + PP_4589 0.68 +0.6
5,208,411 - PP_4589 0.68 -0.9
5,208,411 - PP_4589 0.68 -1.3
5,208,411 - PP_4589 0.68 -0.1
5,208,411 - PP_4589 0.68 -0.4
5,208,439 + PP_4589 0.71 -0.1
5,208,440 - PP_4589 0.71 +0.6
5,208,440 - PP_4589 0.71 +0.8
5,208,514 + PP_4589 0.79 +0.4
5,208,760 + PP_4590 0.17 +0.1
5,208,760 + PP_4590 0.17 +1.3
5,208,761 - PP_4590 0.17 +1.0
5,208,761 - +1.6
5,208,761 - PP_4590 0.17 -0.1
5,208,945 + PP_4590 0.80 -0.2
5,208,945 + PP_4590 0.80 -2.4
5,208,945 + PP_4590 0.80 -0.1
5,208,949 + PP_4590 0.81 +0.7
5,208,949 + PP_4590 0.81 -0.4
5,208,949 + PP_4590 0.81 -0.5
5,208,949 + PP_4590 0.81 -0.3
5,208,949 + PP_4590 0.81 -0.9
5,208,949 + PP_4590 0.81 +0.2
5,208,950 - PP_4590 0.81 +0.5
5,208,950 - PP_4590 0.81 -1.1
5,208,950 - PP_4590 0.81 +0.2
5,208,950 - PP_4590 0.81 -1.0
5,208,950 - PP_4590 0.81 -0.5
5,208,950 - PP_4590 0.81 -0.9
5,208,956 - PP_4590 0.83 -0.4
5,208,956 - PP_4590 0.83 +0.4
5,208,956 - PP_4590 0.83 +0.2
5,208,956 - PP_4590 0.83 +0.9
5,208,983 - -1.0
5,209,093 - -1.9
5,209,420 + PP_4591 0.37 -1.7
5,209,420 + PP_4591 0.37 +0.2
5,209,427 - PP_4591 0.38 -0.5
5,209,481 + PP_4591 0.42 +0.6
5,209,481 + PP_4591 0.42 -0.5
5,209,482 - PP_4591 0.42 -2.4
5,209,482 - PP_4591 0.42 +0.3
5,209,482 - PP_4591 0.42 +0.1
5,209,606 - PP_4591 0.53 +2.1
5,209,606 - PP_4591 0.53 +0.5
5,209,606 - PP_4591 0.53 -0.1

Or see this region's nucleotide sequence