Strain Fitness in Pseudomonas putida KT2440 around PP_4301

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,891,373	+		PP_4300	0.42	+0.4
4,891,374	-		PP_4300	0.42	-0.6
4,891,374	-		PP_4300	0.42	-0.0
4,891,374	-		PP_4300	0.42	-0.5
4,891,374	-		PP_4300	0.42	-0.9
4,891,379	+		PP_4300	0.42	+0.3
4,891,379	+		PP_4300	0.42	-0.5
4,891,379	+		PP_4300	0.42	-1.3
4,891,379	+		PP_4300	0.42	+0.4
4,891,379	+		PP_4300	0.42	-1.0
4,891,379	+		PP_4300	0.42	+1.2
4,891,379	+		PP_4300	0.42	-0.4
4,891,379	+				+0.9
4,891,379	+		PP_4300	0.42	-0.0
4,891,379	+		PP_4300	0.42	+0.2
4,891,380	-		PP_4300	0.42	+0.4
4,891,380	-		PP_4300	0.42	+0.9
4,891,396	-		PP_4300	0.44	+0.2
4,891,417	-		PP_4300	0.45	+0.9
4,891,875	-		PP_4300	0.81	+0.1
4,892,293	+		PP_4301	0.13	+0.1
4,892,746	+		PP_4301	0.45	+0.6
4,892,852	+		PP_4301	0.52	-0.3
4,892,909	+		PP_4301	0.56	-1.0
4,893,121	+		PP_4301	0.71	+0.1
4,893,235	+		PP_4301	0.79	-0.1
4,893,495	+				+0.1
4,893,496	-				+0.6
4,893,656	+				+0.7
4,893,656	+				+1.1
4,893,736	+				-0.4
4,893,736	+				-0.6
4,893,736	+				-0.8
4,893,737	-				+0.3
4,893,737	-				-2.0
4,893,932	-		PP_4302	0.23	-0.5
4,893,961	+		PP_4302	0.26	-0.2
4,893,967	+		PP_4302	0.27	+0.4
4,893,967	+		PP_4302	0.27	+0.6
4,893,968	-		PP_4302	0.27	-0.1
4,893,968	-		PP_4302	0.27	-0.3
4,893,977	+		PP_4302	0.28	+0.5
4,893,977	+		PP_4302	0.28	+0.6
4,894,022	+		PP_4302	0.33	+0.6
4,894,111	+		PP_4302	0.43	-0.9
4,894,111	+		PP_4302	0.43	+1.6
4,894,112	-		PP_4302	0.43	-0.7
4,894,127	+		PP_4302	0.45	-0.2
4,894,127	+		PP_4302	0.45	+0.2
4,894,128	-		PP_4302	0.45	-1.1
4,894,198	+		PP_4302	0.53	-0.8
4,894,199	-		PP_4302	0.53	-0.3
4,894,291	+		PP_4302	0.64	-1.2
4,894,292	-		PP_4302	0.64	-0.8
4,894,373	+		PP_4302	0.73	-0.4
4,894,374	-		PP_4302	0.73	+0.1
4,894,374	-		PP_4302	0.73	+0.1
4,894,475	+		PP_4302	0.85	-0.8
4,894,476	-		PP_4302	0.85	+0.5
4,894,476	-		PP_4302	0.85	+0.3
4,894,476	-		PP_4302	0.85	+0.7