Strain Fitness in Pseudomonas putida KT2440 around PP_4002

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,510,076	-				-0.2
4,510,076	-				-1.1
4,510,076	-				-0.2
4,510,076	-				-0.4
4,510,076	-				-0.1
4,510,076	-				-1.0
4,510,076	-				+0.0
4,510,078	-				-0.0
4,510,078	-				-0.3
4,510,078	-				+0.6
4,510,078	-				-1.5
4,510,082	-				+0.8
4,510,082	-				+0.4
4,510,082	-				-0.7
4,510,082	-				-0.7
4,510,082	-				-0.3
4,510,152	-		PP_4001	0.16	+0.0
4,510,158	-		PP_4001	0.18	-1.3
4,510,158	-		PP_4001	0.18	+0.0
4,510,158	-		PP_4001	0.18	+0.6
4,510,160	-		PP_4001	0.18	-0.1
4,510,364	-		PP_4001	0.73	+0.6
4,510,364	-		PP_4001	0.73	-0.4
4,510,404	-		PP_4001	0.83	-0.2
4,510,422	-		PP_4001	0.88	+0.4
4,510,422	-		PP_4001	0.88	+0.1
4,510,422	-		PP_4001	0.88	+0.1
4,510,422	-		PP_4001	0.88	-0.6
4,510,563	+				+1.4
4,510,564	-				-1.6
4,510,564	-				-2.4
4,510,564	-				-3.9
4,510,566	+				-0.6
4,510,567	-				-3.1
4,510,567	-				-2.1
4,510,597	-		PP_4002	0.10	-3.2
4,510,597	-		PP_4002	0.10	-0.2
4,510,597	-		PP_4002	0.10	-2.4
4,510,597	-		PP_4002	0.10	-1.9
4,510,615	-		PP_4002	0.11	-2.7
4,510,639	-		PP_4002	0.13	-1.8
4,510,639	-		PP_4002	0.13	-3.3
4,510,761	+		PP_4002	0.22	+0.4
4,510,761	+		PP_4002	0.22	-2.5
4,510,762	-		PP_4002	0.23	-4.0
4,510,762	-		PP_4002	0.23	-1.7
4,510,794	+		PP_4002	0.25	-0.9
4,510,876	+		PP_4002	0.31	-2.9
4,510,941	+		PP_4002	0.36	-0.6
4,511,033	+		PP_4002	0.43	-2.2
4,511,033	+		PP_4002	0.43	-0.6
4,511,099	+		PP_4002	0.48	-1.2
4,511,099	+		PP_4002	0.48	-2.4
4,511,099	+		PP_4002	0.48	-1.7
4,511,099	+		PP_4002	0.48	-2.4
4,511,100	-		PP_4002	0.48	-2.7
4,511,100	-		PP_4002	0.48	-3.3
4,511,316	+		PP_4002	0.64	-2.2
4,511,316	+		PP_4002	0.64	-0.9
4,511,317	-		PP_4002	0.64	-0.6
4,511,317	-		PP_4002	0.64	-2.6
4,511,317	-		PP_4002	0.64	-3.9
4,511,317	-		PP_4002	0.64	-4.3
4,511,317	-		PP_4002	0.64	-2.7
4,511,317	-		PP_4002	0.64	-3.3
4,511,317	-		PP_4002	0.64	-2.4
4,511,410	-		PP_4002	0.71	-0.9
4,511,484	+		PP_4002	0.77	-1.7
4,511,484	+		PP_4002	0.77	-2.4
4,511,715	+				-1.4
4,511,716	-				-3.0
4,511,716	-				-2.9
4,511,803	-				-0.3