Strain Fitness in Pseudomonas putida KT2440 around PP_4000

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,507,977	+		PP_3999	0.42	+0.4
4,507,977	+		PP_3999	0.42	-0.9
4,507,977	+		PP_3999	0.42	-0.3
4,507,978	-		PP_3999	0.42	-0.1
4,507,981	+		PP_3999	0.43	+0.4
4,507,981	+		PP_3999	0.43	-0.5
4,507,981	+		PP_3999	0.43	+0.1
4,507,981	+		PP_3999	0.43	+0.4
4,507,981	+		PP_3999	0.43	-2.6
4,507,982	-		PP_3999	0.43	+0.1
4,507,982	-		PP_3999	0.43	-0.1
4,507,982	-		PP_3999	0.43	+0.2
4,508,009	+		PP_3999	0.45	+2.2
4,508,009	+		PP_3999	0.45	+0.7
4,508,009	+		PP_3999	0.45	-0.4
4,508,009	+		PP_3999	0.45	+0.2
4,508,009	+		PP_3999	0.45	-1.5
4,508,010	-		PP_3999	0.45	-1.0
4,508,010	-		PP_3999	0.45	-0.7
4,508,010	-		PP_3999	0.45	+0.2
4,508,010	-		PP_3999	0.45	+0.3
4,508,042	-		PP_3999	0.47	-0.9
4,508,125	+		PP_3999	0.53	+0.8
4,508,126	-		PP_3999	0.53	-1.7
4,508,276	-		PP_3999	0.64	+0.7
4,508,329	+		PP_3999	0.68	-1.3
4,508,413	-		PP_3999	0.74	-1.9
4,508,453	+		PP_3999	0.76	-2.2
4,508,454	-		PP_3999	0.77	-0.9
4,508,454	-		PP_3999	0.77	+0.8
4,508,454	-		PP_3999	0.77	-1.4
4,508,587	+		PP_3999	0.86	-0.3
4,508,774	-				+0.7
4,508,774	-				+0.5
4,510,076	-				-0.2
4,510,076	-				-1.1
4,510,076	-				-0.2
4,510,076	-				-0.4
4,510,076	-				-0.1
4,510,076	-				-1.0
4,510,076	-				+0.0
4,510,078	-				-0.0
4,510,078	-				-0.3
4,510,078	-				+0.6
4,510,078	-				-1.5
4,510,082	-				+0.8
4,510,082	-				+0.4
4,510,082	-				-0.7
4,510,082	-				-0.7
4,510,082	-				-0.3
4,510,152	-		PP_4001	0.16	+0.0
4,510,158	-		PP_4001	0.18	-1.3
4,510,158	-		PP_4001	0.18	+0.0
4,510,158	-		PP_4001	0.18	+0.6
4,510,160	-		PP_4001	0.18	-0.1
4,510,364	-		PP_4001	0.73	+0.6
4,510,364	-		PP_4001	0.73	-0.4
4,510,404	-		PP_4001	0.83	-0.2
4,510,422	-		PP_4001	0.88	+0.4
4,510,422	-		PP_4001	0.88	+0.1
4,510,422	-		PP_4001	0.88	+0.1
4,510,422	-		PP_4001	0.88	-0.6
4,510,563	+				+1.4
4,510,564	-				-1.6
4,510,564	-				-2.4
4,510,564	-				-3.9
4,510,566	+				-0.6
4,510,567	-				-3.1
4,510,567	-				-2.1
4,510,597	-		PP_4002	0.10	-3.2
4,510,597	-		PP_4002	0.10	-0.2
4,510,597	-		PP_4002	0.10	-2.4
4,510,597	-		PP_4002	0.10	-1.9
4,510,615	-		PP_4002	0.11	-2.7
4,510,639	-		PP_4002	0.13	-1.8
4,510,639	-		PP_4002	0.13	-3.3
4,510,761	+		PP_4002	0.22	+0.4
4,510,761	+		PP_4002	0.22	-2.5
4,510,762	-		PP_4002	0.23	-4.0
4,510,762	-		PP_4002	0.23	-1.7
4,510,794	+		PP_4002	0.25	-0.9
4,510,876	+		PP_4002	0.31	-2.9
4,510,941	+		PP_4002	0.36	-0.6
4,511,033	+		PP_4002	0.43	-2.2
4,511,033	+		PP_4002	0.43	-0.6