Strain Fitness in Pseudomonas putida KT2440 around PP_3962

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,471,177	-				-0.7
4,471,177	-				-0.3
4,471,181	-				+0.3
4,471,254	+				-1.1
4,471,290	-				-0.4
4,471,314	-				-0.3
4,471,487	+				-1.8
4,471,487	+				-0.1
4,471,487	+				-0.5
4,471,488	-				-0.0
4,471,488	-				-0.0
4,471,488	-				-0.2
4,471,507	-				+0.2
4,471,658	-				-0.1
4,471,658	-				+0.3
4,471,709	-				+1.1
4,471,748	+				+1.0
4,471,748	+				+0.2
4,471,748	+				-0.2
4,471,749	-				+0.7
4,471,749	-				+0.1
4,471,807	+				+0.4
4,471,807	+				+0.1
4,471,807	+				+0.8
4,471,842	+				-0.8
4,471,842	+				-0.5
4,471,843	-				+0.3
4,471,843	-				+0.2
4,471,843	-				-0.1
4,471,843	-				-0.6
4,471,864	+				+0.3
4,471,864	+				+1.0
4,471,864	+				+0.2
4,471,865	-				-0.4
4,471,865	-				-0.2
4,471,873	+				+0.3
4,471,874	-				+0.7
4,471,887	-				+0.7
4,471,887	-				-1.3
4,471,917	+				-0.6
4,471,982	+				-0.0
4,471,982	+				-0.1
4,471,982	+				-0.5
4,471,982	+				+0.4
4,471,983	-				+0.2
4,471,983	-				-0.3
4,471,983	-				-0.7
4,471,983	-				+0.2
4,471,986	+				+0.8
4,471,986	+				+0.2
4,471,986	+				+0.4
4,471,987	-				+0.6
4,471,987	-				+0.0
4,471,987	-				+0.7
4,471,987	-				+0.3
4,471,987	-				-0.1
4,472,019	+				+0.1
4,472,019	+				-0.2
4,472,019	+				+1.1
4,472,020	-				+0.4
4,472,022	-				+0.7
4,472,040	+				+0.3
4,472,041	-				+0.7
4,472,182	+		PP_3962	0.14	+1.0
4,472,183	-		PP_3962	0.14	-2.4
4,472,203	+		PP_3962	0.17	+0.5
4,472,242	+		PP_3962	0.22	+0.0
4,472,242	+		PP_3962	0.22	+0.9
4,472,242	+		PP_3962	0.22	+0.9
4,472,242	+		PP_3962	0.22	+0.4
4,472,243	-		PP_3962	0.23	-0.6
4,472,243	-				+1.0
4,472,243	-		PP_3962	0.23	+0.3
4,472,293	-		PP_3962	0.30	+0.2
4,472,295	+		PP_3962	0.30	-0.2
4,472,295	+		PP_3962	0.30	+1.7
4,472,296	-		PP_3962	0.30	-0.4
4,472,296	-		PP_3962	0.30	-0.7
4,472,326	+		PP_3962	0.34	+0.5
4,472,326	+		PP_3962	0.34	+0.8
4,472,327	-		PP_3962	0.34	+0.3
4,472,396	-		PP_3962	0.44	-0.1
4,472,476	-		PP_3962	0.55	+0.2
4,472,479	+		PP_3962	0.56	-0.3
4,472,479	+		PP_3962	0.56	-1.3
4,472,517	+		PP_3962	0.61	-0.4
4,472,517	+		PP_3962	0.61	-0.6
4,472,518	-		PP_3962	0.61	-0.4
4,472,518	-		PP_3962	0.61	+0.3
4,472,706	+		PP_3962	0.88	+0.8
4,472,706	+		PP_3962	0.88	+0.4
4,472,760	-				+0.2
4,472,791	+				-1.4
4,472,791	+				-1.0
4,472,792	-				+0.9
4,472,813	+				-0.4
4,472,813	+				+0.0
4,472,813	+				+0.0
4,472,813	+				-0.4
4,472,814	-				-0.1
4,472,814	-				-0.2
4,472,814	-				+0.2
4,472,814	-				+1.1
4,472,814	-				+0.8
4,472,814	-				+0.0
4,472,814	-				+1.2
4,472,817	+				+0.8
4,472,817	+				-0.5
4,472,818	-				-0.1
4,472,818	-				-0.5
4,472,818	-				-0.5
4,472,818	-				-1.0
4,472,818	-				+0.7
4,472,854	-				-0.8
4,472,879	+				+0.6
4,472,880	-				-0.5
4,472,880	-				-0.1
4,472,889	+				+1.1
4,472,971	+				+1.0
4,472,971	+				+0.6
4,472,972	-				+0.8
4,473,017	+				+0.1
4,473,017	+				+0.6
4,473,057	+				+0.5
4,473,058	-				+0.3
4,473,198	+				+0.2
4,473,199	-				-0.7
4,473,271	+				-1.8
4,473,271	+				-1.3
4,473,271	+				+0.0
4,473,272	-				-0.6
4,473,272	-				-1.0
4,473,272	-				+1.2
4,473,276	+				-0.3
4,473,277	-				+0.3
4,473,300	+				-0.4
4,473,300	+				-1.0
4,473,300	+				-0.0
4,473,300	+				+1.0
4,473,300	+				-1.1
4,473,300	+				-0.5
4,473,300	+				-0.5
4,473,301	-				+0.3
4,473,301	-				+0.7
4,473,301	-				+0.6
4,473,301	-				+0.5
4,473,301	-				-0.3
4,473,301	-				-0.4
4,473,304	+				+0.2
4,473,304	+				-1.3
4,473,304	+				-0.8
4,473,304	+				-0.0
4,473,304	+				+0.5
4,473,304	+				+0.9
4,473,304	+				-0.1
4,473,305	-				-0.1
4,473,305	-				+0.1
4,473,305	-				+0.2
4,473,305	-				+0.2
4,473,305	-				+0.6
4,473,324	+				-0.2
4,473,325	-				-1.1
4,473,334	+				-0.0
4,473,334	+				+0.6
4,473,335	-				-0.2
4,473,343	+				+1.0
4,473,344	-				+0.7
4,473,344	-				-0.5
4,473,344	-				-0.6
4,473,346	+				-1.4
4,473,346	+				-0.1
4,473,347	-				-0.0
4,473,347	-				-0.3
4,473,347	-				+0.1
4,473,347	-				-1.5
4,473,372	+				-2.1
4,473,372	+				-1.0
4,473,372	+				+0.2
4,473,723	+		PP_3963	0.80	-0.5
4,473,724	-		PP_3963	0.81	+0.1
4,473,724	-		PP_3963	0.81	+0.1
4,473,744	+		PP_3963	0.87	-0.3
4,473,744	+		PP_3963	0.87	-0.1
4,473,745	-		PP_3963	0.87	-0.3
4,473,745	-		PP_3963	0.87	-0.5
4,473,792	+				-0.5
4,473,793	-				-0.2