Strain Fitness in Pseudomonas putida KT2440 around PP_3889

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,405,625	-		PP_3887	0.12	+0.3
4,405,762	+		PP_3887	0.32	+0.3
4,405,794	+		PP_3887	0.37	+0.9
4,405,794	+		PP_3887	0.37	-0.1
4,405,896	+		PP_3887	0.52	+0.3
4,405,896	+		PP_3887	0.52	+1.1
4,405,897	-		PP_3887	0.53	+0.3
4,405,907	-		PP_3887	0.54	+1.3
4,405,951	+		PP_3887	0.61	-2.0
4,405,952	-		PP_3887	0.61	+0.7
4,405,955	+		PP_3887	0.61	+0.2
4,405,955	+		PP_3887	0.61	-0.3
4,405,993	+		PP_3887	0.67	+1.5
4,405,993	+		PP_3887	0.67	+0.7
4,405,993	+		PP_3887	0.67	-0.1
4,405,994	-		PP_3887	0.67	+0.3
4,405,994	-		PP_3887	0.67	+0.2
4,406,043	+		PP_3887	0.74	+0.3
4,406,044	-		PP_3887	0.74	+1.0
4,406,044	-		PP_3887	0.74	+1.0
4,406,207	+				+0.3
4,406,280	+		PP_3888	0.16	+0.5
4,406,280	+		PP_3888	0.16	+0.9
4,406,282	+		PP_3888	0.17	+0.4
4,406,282	+		PP_3888	0.17	+0.8
4,406,282	+		PP_3888	0.17	+0.7
4,406,386	+		PP_3888	0.49	+0.1
4,406,386	+		PP_3888	0.49	+0.6
4,406,635	+				-0.3
4,406,635	+				+1.3
4,406,741	+		PP_3889	0.15	+2.0
4,406,741	+		PP_3889	0.15	+0.4
4,406,741	+		PP_3889	0.15	-0.6
4,406,741	+		PP_3889	0.15	+1.6
4,406,936	+		PP_3889	0.30	+0.6
4,406,937	-		PP_3889	0.30	-0.2
4,406,948	+		PP_3889	0.31	+0.6
4,406,948	+		PP_3889	0.31	+1.3
4,407,359	+		PP_3889	0.63	+1.9
4,407,402	+		PP_3889	0.66	+1.4
4,407,402	+		PP_3889	0.66	+0.6
4,407,402	+		PP_3889	0.66	+1.1
4,407,425	+		PP_3889	0.68	+0.6
4,407,425	+		PP_3889	0.68	+1.6
4,407,425	+		PP_3889	0.68	+1.6
4,407,426	-		PP_3889	0.68	-0.2
4,407,426	-		PP_3889	0.68	+1.9
4,407,445	+		PP_3889	0.69	+0.6
4,407,446	-		PP_3889	0.69	-0.2
4,407,492	+		PP_3889	0.73	+1.1
4,407,492	+		PP_3889	0.73	+1.4
4,407,492	+		PP_3889	0.73	+0.9
4,407,493	-		PP_3889	0.73	+0.5
4,407,493	-		PP_3889	0.73	-0.3
4,407,493	-		PP_3889	0.73	-1.5
4,407,536	+		PP_3889	0.76	+1.1
4,407,536	+		PP_3889	0.76	+0.5
4,407,536	+				-0.2
4,407,537	-		PP_3889	0.76	-0.4
4,407,740	+				+0.4
4,407,741	-				+0.4
4,407,871	+				+1.9
4,407,872	-				+0.8
4,407,872	-				+0.2
4,407,925	+		PP_3890	0.19	+1.0
4,407,926	-		PP_3890	0.19	+1.4
4,407,953	-		PP_3890	0.25	+0.3
4,407,953	-		PP_3890	0.25	+1.0
4,408,012	+		PP_3890	0.39	+1.1
4,408,012	+		PP_3890	0.39	+0.6
4,408,013	-		PP_3890	0.39	-0.7
4,408,013	-		PP_3890	0.39	+0.5
4,408,013	-		PP_3890	0.39	+1.1
4,408,013	-		PP_3890	0.39	+0.2
4,408,024	+		PP_3890	0.41	+0.4
4,408,024	+		PP_3890	0.41	+1.1
4,408,025	-		PP_3890	0.42	+0.3
4,408,135	+		PP_3890	0.66	+0.3
4,408,135	+		PP_3890	0.66	+2.1
4,408,136	-		PP_3890	0.67	+0.6
4,408,136	-		PP_3890	0.67	+0.4
4,408,147	+		PP_3890	0.69	+0.6
4,408,148	-		PP_3890	0.69	+0.7
4,408,148	-		PP_3890	0.69	+0.7
4,408,268	+				+1.7
4,408,269	-				+1.4
4,408,269	-				-0.4
4,408,303	+				+0.3
4,408,303	+				+0.8
4,408,303	+				+1.0
4,408,304	-				+0.3
4,408,423	+				+1.7
4,408,424	-				+0.5
4,408,429	+				+1.5
4,408,429	+				+0.9
4,408,430	-				+0.0
4,408,430	-				+0.5
4,408,519	+		PP_3891	0.29	+0.4
4,408,625	+		PP_3891	0.65	+1.1
4,408,625	+		PP_3891	0.65	+1.0
4,408,625	+		PP_3891	0.65	+0.4