Strain Fitness in Pseudomonas putida KT2440 around PP_3592

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
4,081,335	+		PP_3591	0.40	+0.5
4,081,335	+		PP_3591	0.40	+0.2
4,081,711	+		PP_3591	0.77	+0.8
4,081,712	-		PP_3591	0.77	+0.7
4,081,712	-		PP_3591	0.77	+0.5
4,081,783	+		PP_3591	0.84	+0.6
4,081,783	+		PP_3591	0.84	+0.3
4,081,783	+		PP_3591	0.84	-0.6
4,081,811	+		PP_3591	0.87	+1.3
4,081,922	+				+0.1
4,081,994	+				+1.3
4,081,994	+				-0.2
4,082,182	+		PP_3592	0.14	-1.0
4,082,182	+		PP_3592	0.14	+0.8
4,082,182	+		PP_3592	0.14	-0.3
4,082,182	+		PP_3592	0.14	-0.6
4,082,182	+		PP_3592	0.14	+0.5
4,082,183	-		PP_3592	0.14	-0.7
4,082,183	-		PP_3592	0.14	-0.7
4,082,183	-		PP_3592	0.14	-0.1
4,082,183	-		PP_3592	0.14	+1.0
4,082,183	-		PP_3592	0.14	+0.8
4,082,183	-		PP_3592	0.14	-0.4
4,082,183	-		PP_3592	0.14	+0.1
4,082,183	-		PP_3592	0.14	+1.8
4,082,290	+		PP_3592	0.25	-1.3
4,082,290	+		PP_3592	0.25	+1.5
4,082,291	-		PP_3592	0.25	+0.3
4,082,311	-		PP_3592	0.28	+0.7
4,082,311	-		PP_3592	0.28	-0.9
4,082,375	-		PP_3592	0.35	-0.2
4,082,444	+		PP_3592	0.42	+0.6
4,082,572	+		PP_3592	0.56	-1.3
4,082,572	+		PP_3592	0.56	-1.8
4,082,572	+		PP_3592	0.56	-1.3
4,082,572	+		PP_3592	0.56	-0.3
4,082,573	-		PP_3592	0.56	-2.3
4,082,573	-		PP_3592	0.56	+0.4
4,082,573	-				+0.6
4,082,573	-		PP_3592	0.56	+0.2
4,082,680	+		PP_3592	0.68	-2.6
4,082,927	+				+1.2
4,082,927	+				+0.4
4,082,977	+				+2.0
4,082,978	-				-0.2
4,082,978	-				-1.0
4,082,978	-				+0.1
4,083,110	+		PP_3593	0.14	-2.0
4,083,110	+		PP_3593	0.14	-0.4
4,083,111	-		PP_3593	0.14	+0.0
4,083,111	-		PP_3593	0.14	-0.6
4,083,111	-		PP_3593	0.14	+0.4
4,083,111	-		PP_3593	0.14	+0.6
4,083,111	-		PP_3593	0.14	-0.5
4,083,114	+		PP_3593	0.15	-1.5
4,083,114	+		PP_3593	0.15	+0.1
4,083,115	-		PP_3593	0.15	-2.4
4,083,115	-		PP_3593	0.15	+0.2
4,083,115	-		PP_3593	0.15	-0.1
4,083,245	+				+1.3
4,083,245	+		PP_3593	0.32	+1.2
4,083,245	+		PP_3593	0.32	-0.0
4,083,246	-		PP_3593	0.32	+0.3
4,083,255	+		PP_3593	0.34	+0.3
4,083,314	+		PP_3593	0.41	+0.3
4,083,315	-		PP_3593	0.42	-0.2
4,083,315	-		PP_3593	0.42	-1.3
4,083,318	-		PP_3593	0.42	+0.5
4,083,318	-		PP_3593	0.42	+0.0
4,083,390	-		PP_3593	0.52	-0.2
4,083,415	+		PP_3593	0.55	-0.4
4,083,443	+		PP_3593	0.59	-0.5
4,083,474	-		PP_3593	0.63	+0.9
4,083,746	+				-0.1
4,083,747	-				-1.0
4,083,747	-				+0.5
4,083,837	+				+0.5