Strain Fitness in Pseudomonas putida KT2440 around PP_3225

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
3,660,005	+				-0.3
3,660,078	+		PP_3224	0.17	+0.1
3,660,078	+		PP_3224	0.17	-0.2
3,660,079	-		PP_3224	0.17	-1.2
3,660,079	-		PP_3224	0.17	-0.7
3,660,079	-		PP_3224	0.17	+1.6
3,660,079	-		PP_3224	0.17	+0.2
3,660,079	-		PP_3224	0.17	+0.8
3,660,278	-		PP_3224	0.43	+1.2
3,660,286	+		PP_3224	0.44	-0.6
3,660,287	-		PP_3224	0.44	-0.2
3,660,301	+		PP_3224	0.45	+0.2
3,660,304	+		PP_3224	0.46	+0.5
3,660,304	+		PP_3224	0.46	-0.4
3,660,305	-		PP_3224	0.46	-0.0
3,660,436	+		PP_3224	0.62	-0.6
3,660,598	+		PP_3224	0.83	+0.6
3,660,599	-		PP_3224	0.83	+0.4
3,660,599	-		PP_3224	0.83	+1.2
3,660,599	-		PP_3224	0.83	-0.7
3,660,599	-		PP_3224	0.83	+0.2
3,660,637	+		PP_3224	0.88	+0.5
3,660,901	+		PP_3225	0.16	-0.3
3,660,901	+		PP_3225	0.16	+0.8
3,660,902	-		PP_3225	0.16	-0.3
3,660,902	-		PP_3225	0.16	+0.7
3,660,902	-		PP_3225	0.16	+0.4
3,661,052	-		PP_3225	0.32	+0.2
3,661,161	+		PP_3225	0.43	-2.3
3,661,339	-		PP_3225	0.62	+0.1
3,661,564	-		PP_3225	0.86	-0.1
3,661,775	+				-0.2
3,661,979	+		PP_3226	0.25	-0.5
3,661,980	-		PP_3226	0.25	+0.7
3,661,980	-		PP_3226	0.25	+0.5
3,662,088	+		PP_3226	0.35	+1.1
3,662,089	-		PP_3226	0.35	+0.0
3,662,089	-		PP_3226	0.35	-0.9
3,662,091	-		PP_3226	0.35	-0.9
3,662,121	-		PP_3226	0.38	+0.6
3,662,343	+		PP_3226	0.57	+0.4
3,662,373	+		PP_3226	0.60	+2.3
3,662,577	+		PP_3226	0.78	-0.3
3,662,578	-		PP_3226	0.78	-0.0
3,662,685	-		PP_3226	0.87	-1.4