Strain Fitness in Pseudomonas putida KT2440 around PP_3178

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
3,601,659	+		PP_3177	0.32	+0.6
3,601,659	+		PP_3177	0.32	+1.9
3,601,660	-		PP_3177	0.32	-0.0
3,601,660	-		PP_3177	0.32	+1.6
3,601,712	-		PP_3177	0.37	-0.7
3,601,782	-		PP_3177	0.43	+0.6
3,601,834	+				+0.2
3,601,844	-		PP_3177	0.48	-0.0
3,602,048	+		PP_3177	0.65	+0.5
3,602,048	+		PP_3177	0.65	-0.7
3,602,048	+		PP_3177	0.65	+1.8
3,602,074	+		PP_3177	0.68	-0.3
3,602,126	-		PP_3177	0.72	-0.8
3,602,126	-		PP_3177	0.72	+0.4
3,602,264	-		PP_3177	0.84	+0.4
3,602,270	+		PP_3177	0.84	-0.3
3,602,808	+		PP_3178	0.19	-0.2
3,602,809	-		PP_3178	0.19	+1.2
3,603,324	+		PP_3178	0.64	-0.3
3,603,324	+		PP_3178	0.64	-0.6
3,603,324	+		PP_3178	0.64	-0.0
3,603,325	-		PP_3178	0.64	-0.6
3,603,583	-		PP_3178	0.87	-0.3
3,603,594	+		PP_3178	0.88	+0.0
3,603,594	+		PP_3178	0.88	-0.1
3,603,594	+		PP_3178	0.88	+0.4
3,603,594	+		PP_3178	0.88	+2.5
3,603,594	+		PP_3178	0.88	+0.9
3,603,594	+		PP_3178	0.88	+0.1
3,603,595	-		PP_3178	0.88	-1.2
3,603,595	-		PP_3178	0.88	-0.3
3,603,595	-		PP_3178	0.88	+0.1
3,603,595	-		PP_3178	0.88	+0.4
3,603,595	-		PP_3178	0.88	-0.7
3,603,595	-		PP_3178	0.88	+0.6
3,603,595	-		PP_3178	0.88	-0.0
3,603,617	-		PP_3178	0.90	-0.1
3,603,617	-		PP_3178	0.90	+0.8
3,603,698	+				-1.0
3,603,755	+				-0.7
3,603,827	+				+1.4
3,603,827	+				-0.9
3,603,827	+				+0.1
3,603,827	+				+0.5
3,603,828	-				+0.2
3,603,828	-				+0.0
3,603,828	-				-0.9
3,603,828	-				-1.8
3,604,291	+		PP_3179	0.60	+1.4
3,604,292	-		PP_3179	0.60	+0.8
3,604,292	-		PP_3179	0.60	+0.2
3,604,292	-		PP_3179	0.60	+0.9
3,604,302	-		PP_3179	0.61	+0.3
3,604,347	-		PP_3179	0.66	-0.4
3,604,347	-		PP_3179	0.66	+0.1