Strain Fitness in Pseudomonas putida KT2440 around PP_3154

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
3,571,747	-		PP_3152	0.89	-1.0
3,571,765	+				+0.8
3,571,778	+				-1.1
3,571,779	-				-0.7
3,571,779	-				-0.7
3,571,929	+				+0.5
3,571,929	+				+0.5
3,571,929	+				+0.6
3,571,930	-				+0.1
3,571,930	-				+0.3
3,571,932	+				-0.0
3,571,932	+				+1.0
3,571,932	+				+0.1
3,571,932	+				-0.4
3,571,933	-				-0.8
3,571,933	-				-0.1
3,571,933	-				-1.0
3,571,933	-				-0.0
3,571,933	-				-0.7
3,571,961	+				+0.1
3,571,962	-				+0.5
3,571,962	-				-0.0
3,571,980	+				+0.5
3,571,981	-				+0.1
3,571,981	-				-0.0
3,572,179	+		PP_3153	0.48	+0.4
3,572,179	+		PP_3153	0.48	-0.5
3,572,179	+		PP_3153	0.48	+0.4
3,572,179	+		PP_3153	0.48	+0.4
3,572,179	+		PP_3153	0.48	+1.2
3,572,180	-		PP_3153	0.48	+0.2
3,572,257	+		PP_3153	0.66	+0.3
3,572,257	+		PP_3153	0.66	+0.5
3,572,258	-		PP_3153	0.66	-0.9
3,572,289	+		PP_3153	0.73	+0.1
3,572,289	+		PP_3153	0.73	+0.2
3,572,289	+		PP_3153	0.73	+0.8
3,572,290	-		PP_3153	0.73	+0.4
3,572,290	-		PP_3153	0.73	-1.1
3,572,314	-		PP_3153	0.79	-0.1
3,572,314	-		PP_3153	0.79	-0.4
3,572,396	+				-0.4
3,572,507	-				-1.4
3,572,513	+				-0.8
3,572,513	+				+0.1
3,572,513	+				+0.2
3,572,522	+				-0.5
3,572,569	-				+0.1
3,572,576	-				-1.2
3,572,675	+				-0.4
3,572,675	+				-0.1
3,572,694	-				+0.2
3,572,782	+		PP_3154	0.23	-0.8
3,572,782	+		PP_3154	0.23	-1.8
3,572,782	+		PP_3154	0.23	-0.0
3,572,783	-		PP_3154	0.23	-1.2
3,572,783	-		PP_3154	0.23	-1.4
3,572,867	-		PP_3154	0.39	-0.3
3,572,867	-		PP_3154	0.39	+0.2
3,572,867	-		PP_3154	0.39	-0.1
3,572,867	-		PP_3154	0.39	+0.1
3,572,867	-		PP_3154	0.39	-0.4
3,572,867	-				-0.8
3,572,872	+		PP_3154	0.40	-0.6
3,572,872	+		PP_3154	0.40	-0.5
3,572,872	+		PP_3154	0.40	-0.0
3,572,932	+		PP_3154	0.52	-0.8
3,572,932	+		PP_3154	0.52	-0.3
3,572,933	-		PP_3154	0.52	-1.0
3,572,933	-		PP_3154	0.52	-0.0
3,572,950	-		PP_3154	0.55	-0.4
3,572,950	-		PP_3154	0.55	-0.9
3,572,950	-		PP_3154	0.55	-1.0
3,572,954	-		PP_3154	0.56	-0.3
3,572,954	-		PP_3154	0.56	-0.8
3,572,962	+		PP_3154	0.57	-0.4
3,572,962	+		PP_3154	0.57	-0.6
3,572,963	-		PP_3154	0.58	-0.9
3,572,963	-		PP_3154	0.58	-0.4
3,572,963	-		PP_3154	0.58	-0.2
3,572,963	-		PP_3154	0.58	-0.4
3,572,977	-		PP_3154	0.60	-0.3
3,573,051	+		PP_3154	0.75	-0.6
3,573,090	-		PP_3154	0.82	-0.1
3,573,109	+		PP_3154	0.86	+0.6
3,573,109	+		PP_3154	0.86	-1.0
3,573,110	-		PP_3154	0.86	+0.0
3,573,146	+				-1.1
3,573,146	+				-0.2
3,573,146	+				+1.2
3,573,146	+				+0.3
3,573,166	+				-0.8
3,573,167	-				-0.9
3,573,167	-				-0.3
3,573,223	+				-1.5
3,573,224	-				+0.4
3,573,225	+				-2.0
3,573,226	-				-0.1
3,573,266	+				+0.2
3,573,266	+				+0.3
3,573,266	+				-0.4
3,573,266	+				-0.2
3,573,266	+				+0.3
3,573,266	+				+0.1
3,573,266	+				+1.0
3,573,266	+				-0.5
3,573,267	-				+0.4
3,573,267	-				+0.4
3,573,267	-				+0.2
3,573,267	-				+0.7
3,573,267	-				-0.4
3,573,267	-				-0.1
3,573,267	-				+0.5
3,573,267	-				-0.1
3,573,267	-				-0.1
3,573,270	+				-2.1
3,573,270	+				-1.1
3,573,270	+				-0.7
3,573,270	+				+0.4
3,573,270	+				-0.8
3,573,270	+				+0.1
3,573,270	+				-0.0
3,573,270	+				-1.0
3,573,270	+				-0.8
3,573,270	+				+0.2
3,573,270	+				-0.5
3,573,270	+				-1.5
3,573,270	+				+0.4
3,573,270	+				+0.6
3,573,271	-				+0.1
3,573,271	-				+1.2
3,573,271	-				+0.4
3,573,271	-				+0.0
3,573,271	-				+0.4
3,573,271	-				+0.5
3,573,271	-				-0.0
3,573,271	-				+0.6
3,573,271	-				-0.2
3,573,271	-				+0.2
3,573,271	-				-1.1
3,573,271	-				+0.2
3,573,271	-				+0.9
3,573,354	+				-0.2
3,573,354	+				-0.2
3,573,354	+				+0.4
3,573,354	+				-0.7
3,573,355	-				+1.0
3,573,382	-				+0.8
3,573,396	+				-0.4
3,573,396	+				+0.3
3,573,396	+				-0.1
3,573,396	+				-1.2
3,573,396	+				-0.9
3,573,397	-				+0.3
3,573,431	+		PP_3155	0.10	-0.7
3,573,431	+		PP_3155	0.10	+0.6
3,573,431	+		PP_3155	0.10	+0.5
3,573,432	-		PP_3155	0.10	+0.6
3,573,432	-		PP_3155	0.10	-1.2
3,573,435	+		PP_3155	0.10	-0.6
3,573,435	+		PP_3155	0.10	-0.1
3,573,435	+		PP_3155	0.10	-0.3
3,573,436	-		PP_3155	0.10	+0.9
3,573,436	-		PP_3155	0.10	-0.1
3,573,439	+		PP_3155	0.11	-0.0
3,573,439	+		PP_3155	0.11	+0.6
3,573,439	+		PP_3155	0.11	-0.4
3,573,439	+		PP_3155	0.11	-1.6
3,573,440	-		PP_3155	0.11	+0.5
3,573,440	-		PP_3155	0.11	-0.9
3,573,489	+		PP_3155	0.13	+0.5
3,573,489	+		PP_3155	0.13	-0.1
3,573,490	-		PP_3155	0.13	-0.1
3,573,490	-		PP_3155	0.13	-0.1
3,573,582	+		PP_3155	0.17	-1.1
3,573,583	-		PP_3155	0.17	-0.1
3,573,589	-		PP_3155	0.18	+1.1
3,573,679	-		PP_3155	0.22	-0.2
3,573,682	+		PP_3155	0.22	-0.4
3,573,682	+		PP_3155	0.22	-1.7
3,573,735	+		PP_3155	0.24	+0.1
3,573,735	+		PP_3155	0.24	-0.2
3,573,736	-		PP_3155	0.24	-0.1
3,573,796	-		PP_3155	0.27	-0.3
3,573,796	-		PP_3155	0.27	+0.6
3,573,871	+		PP_3155	0.31	+1.8
3,573,872	-		PP_3155	0.31	-0.4
3,573,872	-		PP_3155	0.31	-0.0
3,573,879	+		PP_3155	0.31	+0.2
3,573,880	-		PP_3155	0.31	-0.2
3,573,906	+		PP_3155	0.32	+0.0
3,574,007	+		PP_3155	0.37	-0.5
3,574,007	+		PP_3155	0.37	-0.7
3,574,008	-				+3.8
3,574,146	+		PP_3155	0.44	-0.4
3,574,146	+		PP_3155	0.44	+1.0
3,574,146	+		PP_3155	0.44	+0.6
3,574,147	-		PP_3155	0.44	-0.4
3,574,161	+		PP_3155	0.44	+0.3
3,574,162	-		PP_3155	0.44	-0.3