Strain Fitness in Pseudomonas putida KT2440 around PP_3134

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
3,549,152	+		PP_3133	0.33	+0.3
3,549,152	+		PP_3133	0.33	+0.2
3,549,152	+		PP_3133	0.33	+0.2
3,549,157	+		PP_3133	0.33	-1.4
3,549,158	-		PP_3133	0.33	-0.5
3,549,202	+		PP_3133	0.36	+0.1
3,549,202	+		PP_3133	0.36	-0.7
3,549,203	-		PP_3133	0.36	-0.2
3,549,203	-		PP_3133	0.36	-1.0
3,549,267	-		PP_3133	0.41	-0.1
3,549,267	-		PP_3133	0.41	+1.8
3,549,267	-		PP_3133	0.41	-1.0
3,549,425	-		PP_3133	0.52	-0.2
3,549,425	-		PP_3133	0.52	+0.2
3,549,479	+		PP_3133	0.55	-0.2
3,549,480	-		PP_3133	0.55	-0.1
3,549,480	-		PP_3133	0.55	+0.1
3,549,480	-		PP_3133	0.55	+0.2
3,549,480	-		PP_3133	0.55	-0.6
3,549,480	-		PP_3133	0.55	-0.4
3,549,482	+		PP_3133	0.55	-0.5
3,549,482	+		PP_3133	0.55	+0.6
3,549,482	+		PP_3133	0.55	+0.6
3,549,482	+		PP_3133	0.55	+1.6
3,549,483	-		PP_3133	0.55	+0.8
3,549,509	+		PP_3133	0.57	+0.4
3,549,509	+		PP_3133	0.57	+0.1
3,549,510	-		PP_3133	0.57	-1.3
3,549,510	-		PP_3133	0.57	-0.0
3,549,564	-		PP_3133	0.61	+1.4
3,549,779	-		PP_3133	0.76	-0.7
3,550,005	-				-0.1
3,550,005	-				-0.6
3,550,005	-				-0.4
3,550,005	-				-0.5
3,550,145	+				+0.2
3,550,146	-				+0.7
3,550,146	-				+0.1
3,550,146	-				-0.7
3,550,175	+				-0.7
3,550,176	-				+0.0
3,550,238	+		PP_3134	0.12	+0.1
3,550,239	-		PP_3134	0.12	+0.3
3,550,306	-		PP_3134	0.22	-0.0
3,550,306	-		PP_3134	0.22	+0.2
3,550,347	+				+0.6
3,550,347	+		PP_3134	0.28	+0.4
3,550,347	+		PP_3134	0.28	-0.9
3,550,348	-		PP_3134	0.28	-1.3
3,550,348	-		PP_3134	0.28	-0.4
3,550,401	-		PP_3134	0.36	-0.1
3,550,432	+		PP_3134	0.40	+0.3
3,550,436	+		PP_3134	0.41	+1.4
3,550,436	+		PP_3134	0.41	-0.5
3,550,437	-		PP_3134	0.41	-0.4
3,550,493	-		PP_3134	0.49	-0.4
3,550,493	-		PP_3134	0.49	-0.9
3,550,493	-		PP_3134	0.49	-1.6
3,550,668	+		PP_3134	0.74	+0.6
3,550,668	+		PP_3134	0.74	-0.6
3,550,669	-		PP_3134	0.74	-0.5
3,550,669	-		PP_3134	0.74	+1.3
3,550,743	+		PP_3134	0.85	+0.2
3,550,782	+				+0.2
3,550,782	+				-0.9
3,550,783	-				-0.1
3,550,827	+				-0.3
3,550,827	+				-1.1
3,550,957	+		PP_3135	0.11	+0.5
3,550,958	-		PP_3135	0.11	+0.5
3,551,101	+				-0.4
3,551,102	-		PP_3135	0.26	+0.5
3,551,102	-		PP_3135	0.26	+0.8
3,551,102	-		PP_3135	0.26	-2.7
3,551,102	-		PP_3135	0.26	+0.4
3,551,102	-		PP_3135	0.26	+1.6
3,551,119	-		PP_3135	0.28	-0.2
3,551,164	+		PP_3135	0.33	-1.0
3,551,164	+		PP_3135	0.33	-0.0
3,551,165	-		PP_3135	0.33	+0.9
3,551,165	-		PP_3135	0.33	+2.2
3,551,245	+		PP_3135	0.41	+0.5
3,551,380	+		PP_3135	0.55	+2.6
3,551,381	-		PP_3135	0.56	-0.0
3,551,441	-		PP_3135	0.62	+0.4
3,551,444	-				+0.6
3,551,501	-		PP_3135	0.68	+0.2
3,551,587	+		PP_3135	0.77	+0.9
3,551,612	-		PP_3135	0.80	+0.6
3,551,803	+				+0.6
3,551,803	+				+1.2
3,551,803	+				-0.1
3,551,803	+				+0.5
3,551,803	+				-0.2
3,551,803	+				+0.8
3,551,804	-				+0.7
3,551,804	-				-0.5
3,551,804	-				-0.5