Strain Fitness in Pseudomonas putida KT2440 around PP_2381

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
2,719,845	-		PP_2379	0.31	+0.6
2,720,022	-		PP_2379	0.60	+0.1
2,720,109	-		PP_2379	0.75	+1.0
2,720,135	+		PP_2379	0.79	+0.0
2,720,159	-		PP_2379	0.83	-0.6
2,720,159	-		PP_2379	0.83	+1.9
2,720,162	+		PP_2379	0.83	-2.5
2,720,162	+		PP_2379	0.83	+0.3
2,720,162	+		PP_2379	0.83	-0.1
2,720,163	-		PP_2379	0.83	-0.6
2,720,163	-		PP_2379	0.83	+1.2
2,720,163	-		PP_2379	0.83	-0.8
2,720,163	-		PP_2379	0.83	+0.2
2,720,163	-		PP_2379	0.83	-0.8
2,720,169	-		PP_2379	0.84	+0.0
2,720,169	-		PP_2379	0.84	+0.6
2,720,304	+				-1.6
2,720,305	-				+0.3
2,720,305	-				+1.3
2,721,055	-				+0.2
2,721,145	-				+0.2
2,721,149	-				-0.6
2,721,149	-				-0.6
2,721,337	-				-0.3
2,721,710	-		PP_2382	0.19	-0.4
2,721,712	+		PP_2382	0.19	-0.3
2,721,713	-		PP_2382	0.19	-1.8
2,721,781	+		PP_2382	0.25	-0.4
2,721,834	+		PP_2382	0.29	+1.1
2,721,835	-		PP_2382	0.29	-0.5
2,721,835	-		PP_2382	0.29	+0.4
2,721,886	+		PP_2382	0.33	-0.1
2,721,886	+		PP_2382	0.33	-0.7
2,721,967	+		PP_2382	0.40	-0.1
2,721,967	+		PP_2382	0.40	-2.1
2,721,968	-		PP_2382	0.40	-0.6
2,721,968	-		PP_2382	0.40	-0.5
2,722,013	+		PP_2382	0.44	-0.1
2,722,013	+		PP_2382	0.44	+1.2
2,722,031	+		PP_2382	0.45	+0.2
2,722,031	+		PP_2382	0.45	-0.3
2,722,032	-		PP_2382	0.45	+0.8
2,722,038	-		PP_2382	0.46	-2.6