Strain Fitness in Pseudomonas putida KT2440 around PP_2300
Experiment: Formaldehyde 0.03125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formaldehyde 0.03125 vol% |
---|---|---|---|---|---|
remove | |||||
2,627,541 | + | PP_2299 | 0.47 | +2.8 | |
2,627,541 | + | PP_2299 | 0.47 | +0.2 | |
2,627,664 | + | PP_2299 | 0.56 | +0.7 | |
2,627,664 | + | PP_2299 | 0.56 | +1.2 | |
2,627,665 | - | PP_2299 | 0.56 | -0.8 | |
2,628,214 | + | -0.6 | |||
2,628,302 | + | -1.6 | |||
2,628,302 | + | +0.2 | |||
2,628,317 | + | -0.2 | |||
2,629,368 | + | +1.2 | |||
2,629,369 | - | PP_2301 | 0.24 | +1.2 | |
2,629,605 | + | PP_2301 | 0.42 | -1.1 |
Or see this region's nucleotide sequence