Strain Fitness in Pseudomonas putida KT2440 around PP_2300

Experiment: Formaldehyde 0.03125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2299 and PP_2300 are separated by 91 nucleotidesPP_2300 and PP_2301 are separated by 63 nucleotides PP_2299: PP_2299 - Trigger factor, at 2,626,916 to 2,628,247 _2299 PP_2300: PP_2300 - ATP-dependent Clp protease proteolytic subunit, at 2,628,339 to 2,628,980 _2300 PP_2301: PP_2301 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,629,044 to 2,630,372 _2301 Position (kb) 2628 2629Strain fitness (log2 ratio) -1 0 1 2 3at 2627.541 kb on + strand, within PP_2299at 2627.541 kb on + strand, within PP_2299at 2627.664 kb on + strand, within PP_2299at 2627.664 kb on + strand, within PP_2299at 2627.665 kb on - strand, within PP_2299at 2628.214 kb on + strandat 2628.302 kb on + strandat 2628.302 kb on + strandat 2628.317 kb on + strandat 2629.368 kb on + strandat 2629.369 kb on - strand, within PP_2301at 2629.605 kb on + strand, within PP_2301

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Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
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2,627,541 + PP_2299 0.47 +2.8
2,627,541 + PP_2299 0.47 +0.2
2,627,664 + PP_2299 0.56 +0.7
2,627,664 + PP_2299 0.56 +1.2
2,627,665 - PP_2299 0.56 -0.8
2,628,214 + -0.6
2,628,302 + -1.6
2,628,302 + +0.2
2,628,317 + -0.2
2,629,368 + +1.2
2,629,369 - PP_2301 0.24 +1.2
2,629,605 + PP_2301 0.42 -1.1

Or see this region's nucleotide sequence